SRR3549737_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549737_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1298538
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	4435	0.34153794498120194	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	4193	0.3229016016473912	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3659	0.2817784308198913	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCC	3021	0.23264625293984464	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	2653	0.20430668952314066	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	2407	0.1853623074565396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCGT	20	7.033626E-4	45.0	33
TAGCCCG	20	7.033626E-4	45.0	21
TGCGATA	20	7.033626E-4	45.0	41
TACGAAC	20	7.033626E-4	45.0	12
GTATACG	55	1.8189894E-12	45.0	20
TATAGCG	20	7.033626E-4	45.0	41
TATGTCG	50	1.0822987E-9	40.5	1
TTTGTCG	375	0.0	39.6	1
TTGGGAC	3350	0.0	38.88806	5
TTTGGGC	2845	0.0	38.752197	4
TTTGGGA	10450	0.0	38.648323	4
TGGGAAC	1700	0.0	38.514706	6
TGGGCGA	1840	0.0	38.274456	6
ACACGCG	620	0.0	38.10484	36
TTGGGAT	5380	0.0	38.09944	5
TATTGCG	65	9.094947E-12	38.076927	1
GCGATAT	65	9.094947E-12	38.076927	9
GGGCGAT	2645	0.0	38.024574	7
CACGACC	415	0.0	37.951805	27
TTGGGCG	1595	0.0	37.94671	5