SRR3549734_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549734_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	925396
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	3390	0.36632965778974624	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2727	0.29468465392113213	No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	2609	0.28193335609836223	No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	2212	0.23903280325395831	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	2011	0.21731237221686717	No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1953	0.21104478515143787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCCGTA	25	3.8902137E-5	45.000004	19
GTCGAGT	20	7.032573E-4	45.0	31
CGAGTAA	20	7.032573E-4	45.0	15
TAATTCG	20	7.032573E-4	45.0	22
CGCAGTA	35	1.2115925E-7	45.0	44
AACTCGT	20	7.032573E-4	45.0	34
GCGAGAC	105	0.0	42.857143	21
TCGGCGT	70	0.0	41.785713	4
TTCTACG	65	0.0	41.538464	1
TATTCCG	65	0.0	41.538464	1
CGGGTAC	45	1.927583E-8	40.0	6
TCGTTTG	310	0.0	39.919357	1
TTTGGGA	7630	0.0	39.57405	4
TCTAGCG	40	3.457244E-7	39.375	1
CGGGCTC	240	0.0	39.374996	6
ACGACCA	110	0.0	38.863632	28
TTGGGAT	3805	0.0	38.6728	5
TCGTTCA	100	0.0	38.250004	16
TCGCTTG	95	0.0	37.894737	1
TTGGGAC	2940	0.0	37.882652	5