SRR3549730_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549730_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1386720
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	5198	0.37484135225568244	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	4849	0.34967405099803855	No Hit
TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	4296	0.3097957770854967	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3589	0.258812161070728	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	2605	0.18785335179416177	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC	2472	0.17826237452405677	No Hit
TCCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG	1735	0.12511538017768548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGATA	115	0.0	45.000004	8
CGCGTAT	35	1.2121745E-7	45.0	26
CGTTCAT	300	0.0	39.750004	17
TTTGGGA	10005	0.0	38.81559	4
TTGGGAT	4980	0.0	38.76506	5
TTTGGGC	3465	0.0	38.44156	4
GCAACCC	200	0.0	38.249996	22
CGCCGTT	65	9.094947E-12	38.07692	26
TGGGATC	2130	0.0	37.711266	6
TTGGGAC	4100	0.0	37.59146	5
GGCCGAT	485	0.0	37.57732	8
TCGCACC	30	1.14004346E-4	37.500004	41
CGACGTC	30	1.14004346E-4	37.500004	18
TTGGGAG	4720	0.0	37.46822	5
CAACCCG	205	0.0	37.317074	23
TCGTTCA	320	0.0	37.265625	16
TGGGACG	405	0.0	37.22222	6
GCGCGAC	750	0.0	37.2	9
TATTGCG	115	0.0	37.173916	1
CTTGTTG	830	0.0	37.138554	1