SRR3549726_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549726_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2397513
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26343	1.0987635937740483	No Hit
CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT	7330	0.3057334829884134	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	6301	0.26281400768212726	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC	4420	0.18435770734089868	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	4388	0.1830229909076614	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	4021	0.1677154618139714	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	2898	0.12087525698505075	No Hit
TCCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	2466	0.10285658513634753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCG	20	7.0348225E-4	45.0	10
TATTCGC	25	3.8920778E-5	45.0	25
CGTAAGG	30	2.1664928E-6	44.999996	2
CGTTTTT	18420	0.0	44.254887	1
GTTAGCG	95	0.0	42.63158	1
TAGCGCG	75	0.0	42.0	1
ACTTGCG	65	0.0	41.53846	1
AGTTTCG	35	6.25113E-6	38.571426	1
AATTCGG	35	6.25113E-6	38.571426	23
CCGTTCG	35	6.25113E-6	38.571426	1
TGGGCGA	3155	0.0	38.153725	6
TTTCGCG	655	0.0	38.129772	1
TTGGGAC	6580	0.0	37.5114	5
TCGTTAG	90	0.0	37.500004	1
TACGGGA	390	0.0	37.5	4
TCGCGCG	120	0.0	37.499996	1
TTTGGGA	17690	0.0	37.457603	4
GTTTTTT	22190	0.0	37.364803	2
TTGGGCG	2560	0.0	37.353516	5
GGCACCG	1010	0.0	37.202972	8