SRR3549724_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549724_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	326341
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	3167	0.9704572824131813	No Hit
TCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	2421	0.7418620400133602	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1852	0.5675045427941938	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1477	0.45259406571653577	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	686	0.21020956606739577	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	676	0.20714528667865822	No Hit
TCCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	658	0.20162958377893062	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	538	0.16485823111408007	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	487	0.14923040623151856	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	475	0.1455532709650335	No Hit
TGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	463	0.14187613569854846	No Hit
CGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	450	0.13789257249318965	No Hit
TTCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	446	0.13666686073769463	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC	384	0.11766832852752183	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG	382	0.11705547264977431	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	341	0.10449192715595036	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC	331	0.10142764776721282	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGG	45	3.8380676E-10	45.000004	2
TCGATCA	55	1.8189894E-12	45.000004	17
CCCCACG	45	3.8380676E-10	45.000004	38
TTACACG	45	3.8380676E-10	45.000004	34
CTAGACG	20	7.025854E-4	45.0	26
TGCCCCG	20	7.025854E-4	45.0	1
TAGACGG	20	7.025854E-4	45.0	27
TACGGGA	40	6.7884685E-9	45.0	4
ACGGGAA	25	3.884646E-5	45.0	5
TTGAGCG	20	7.025854E-4	45.0	1
ATCCGGC	20	7.025854E-4	45.0	44
TGTTGCG	40	6.7884685E-9	45.0	1
CGCTAGA	20	7.025854E-4	45.0	24
ACACTAC	20	7.025854E-4	45.0	32
ACGAGTT	20	7.025854E-4	45.0	12
TGCGTAG	20	7.025854E-4	45.0	1
CGGACGA	20	7.025854E-4	45.0	31
CGGGGTA	90	0.0	42.500004	6
TATCTGG	65	0.0	41.538464	2
GCCTCGA	65	0.0	41.538464	14