SRR3549721_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549721_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2461156
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10194	0.4141956056422267	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	5632	0.22883555532440852	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	5624	0.22851050481968635	No Hit
TCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	4963	0.20165320686701696	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	4396	0.17861525234483308	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	2970	0.12067499987810607	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	2495	0.10137512616022716	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	65	41.538464	5
AAACACG	505	40.544556	40
CGTTTTT	5330	40.398685	1
TATTGCG	115	39.130436	1
CGACCAA	565	39.02655	29
TCAAGCG	590	38.51695	17
CGTTTGG	1690	38.476334	2
TTACACG	2205	37.7551	34
GGGCGAT	4360	37.4656	7
ACGACCA	590	37.372883	28
TGGGCGA	2945	37.359932	6
TTTGGGA	10675	37.243557	4
TTGGGAC	3785	37.21268	5
TTTGGGC	5825	37.04292	4
AACACGT	530	36.933964	41
ACACGCG	2220	36.89189	36
GCGAGAC	605	36.818184	21
TTGGGAG	6365	36.7989	5
GTTTGCG	630	36.785713	1
CCCGATC	340	36.39706	41