SRR3549714_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549714_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	669859
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	3459	0.516377327168852	No Hit
TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	3109	0.46412752534488605	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	3085	0.46054468179124264	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	2199	0.3282780406025746	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1767	0.26378685663699375	No Hit
TCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	1149	0.17152863513067676	No Hit
GCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	790	0.11793526697409455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAA	25	3.8890557E-5	45.000004	42
CGAACCC	20	7.031176E-4	45.000004	14
GATCGCG	20	7.031176E-4	45.000004	23
CGCATAG	20	7.031176E-4	45.000004	24
TCGGGTC	20	7.031176E-4	45.000004	5
CGTCTAT	25	3.8890557E-5	45.000004	18
TAACGTG	20	7.031176E-4	45.000004	17
CACGAAC	25	3.8890557E-5	45.000004	19
TAACGGA	20	7.031176E-4	45.000004	29
TGACGGA	20	7.031176E-4	45.000004	22
CGCTGAT	20	7.031176E-4	45.000004	25
TAGCACG	20	7.031176E-4	45.000004	1
TACGCCC	20	7.031176E-4	45.000004	18
TCGTGAC	20	7.031176E-4	45.000004	37
CGTAGGC	20	7.031176E-4	45.000004	33
TCGTCTA	25	3.8890557E-5	45.000004	17
TTAACGA	25	3.8890557E-5	45.000004	19
TAAGGTG	25	3.8890557E-5	45.000004	25
TGCTACG	20	7.031176E-4	45.000004	1
TAGGCGC	20	7.031176E-4	45.000004	35