SRR3549713_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549713_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	938210
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2222	0.23683397107257437	No Hit
TCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1970	0.20997431278711587	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	1875	0.19984864795728036	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1738	0.18524637341320171	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1587	0.1691518956310421	Illumina Single End Adapter 1 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1305	0.13909465897826712	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAATCGC	30	2.165074E-6	45.000004	29
AACGTTA	25	3.8902555E-5	45.0	14
ACCGCGT	20	7.0326234E-4	45.0	26
CGGTTAT	45	3.8380676E-10	45.0	37
CGCATCG	20	7.0326234E-4	45.0	21
CGTTGAT	20	7.0326234E-4	45.0	25
CCTCGTA	25	3.8902555E-5	45.0	34
CGTTAGT	25	3.8902555E-5	45.0	16
AGGTTCG	20	7.0326234E-4	45.0	36
CGTAACG	25	3.8902555E-5	45.0	14
CTTTACG	45	3.8380676E-10	45.0	1
GACGATT	20	7.0326234E-4	45.0	37
CGTCATA	25	3.8902555E-5	45.0	38
TCAAACG	20	7.0326234E-4	45.0	35
CCCTCGT	230	0.0	43.04348	14
ACGAACG	75	0.0	42.0	21
TGGGTAC	505	0.0	41.88119	6
TTCACGG	100	0.0	40.5	2
ACACGCG	95	0.0	40.263157	36
GCGCGAC	280	0.0	40.178574	9