SRR3549712_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549712_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1637946
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	4287	0.2617302401910686	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	4162	0.2540987309715949	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	4136	0.2525113770539444	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4012	0.2449409199082265	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	3922	0.23944623327020548	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	3502	0.213804362292774	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	3480	0.21246121667014667	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	3406	0.2079433632122182	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTA	35	1.2123564E-7	45.000004	45
ACTACGC	25	3.8915343E-5	45.000004	45
CACGTAA	35	1.2123564E-7	45.000004	33
ACGCATA	20	7.034167E-4	45.0	15
ATATCGA	20	7.034167E-4	45.0	41
GGACGTA	45	3.8562575E-10	45.0	8
CATAACG	20	7.034167E-4	45.0	19
TATCGAT	20	7.034167E-4	45.0	43
CGAACGA	95	0.0	42.63158	22
CGAGGGA	270	0.0	40.833332	4
CAACCCG	45	1.9292202E-8	40.0	23
TTGGGAC	5280	0.0	39.715908	5
TTCGTTG	445	0.0	39.4382	1
CTAGTCG	40	3.4594268E-7	39.375	1
TGTTGCG	475	0.0	39.31579	1
TTTGTCG	420	0.0	39.107143	1
GCGCGAC	415	0.0	39.036144	9
TCGCGCG	75	0.0	39.0	1
TCGTTCA	295	0.0	38.898304	16
TTGTTCG	285	0.0	38.68421	1