SRR3549711_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549711_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2035096
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19588	0.96250987668395	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	4711	0.23148785118736415	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	4667	0.22932579101919517	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	3186	0.15655281126787138	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	2670	0.13119774202298073	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCC	2544	0.12500638790504232	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACG	20	7.034569E-4	45.000004	40
GGTACGA	25	3.8918693E-5	45.0	9
CGTTTTT	11960	0.0	43.739548	1
CGCGGAT	95	0.0	42.63158	4
TATTTCG	85	0.0	39.705883	1
CGTTCAT	290	0.0	39.56897	17
TCGTTCA	285	0.0	39.473682	16
TCTTGCG	570	0.0	38.684208	1
TACGAAT	285	0.0	38.684208	12
GCTACGA	280	0.0	38.571426	10
TACGGGA	395	0.0	38.16456	4
TGGGCGA	2560	0.0	37.880863	6
TTGGGAC	5655	0.0	37.679047	5
TTTTGCG	1750	0.0	37.67143	1
CGTTTGG	1195	0.0	37.656906	2
GGGCGAT	3790	0.0	37.638523	7
TTTGGGA	13850	0.0	37.624546	4
TTGGGAT	8315	0.0	37.612747	5
TATATCG	30	1.1402312E-4	37.499996	45
TACGATT	30	1.1402312E-4	37.499996	11