SRR3549709_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549709_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	658446
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	11463	1.7409172506173627	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	10950	1.6630065335653947	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	10092	1.5326997202504078	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	3412	0.5181897984041212	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	2875	0.4366341355251608	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCGTTGAT	2813	0.4272180254720964	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	2709	0.411423260221795	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT	2486	0.3775556385793216	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	2295	0.3485479447061718	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTC	2261	0.34338427145126554	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTA	1997	0.30328986735434643	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1871	0.28415390176263505	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1732	0.263043590514636	No Hit
GAATGCTACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	912	0.13850794142572057	No Hit
GAATGCTACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	825	0.12529501280287222	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGT	693	0.10524781075441265	No Hit
TCCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG	686	0.10418470155487314	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCATC	20	7.031088E-4	45.000004	40
GGTGTAC	40	6.8066583E-9	45.000004	8
CAACCCG	20	7.031088E-4	45.000004	23
ATATGGA	20	7.031088E-4	45.000004	29
CGTTACG	20	7.031088E-4	45.000004	45
GGAACGT	35	1.2108649E-7	45.000004	8
ACTCGTC	20	7.031088E-4	45.000004	1
GCGATAT	20	7.031088E-4	45.000004	9
ACGCTAG	20	7.031088E-4	45.000004	37
ACGTCAT	20	7.031088E-4	45.000004	11
CATCGCA	20	7.031088E-4	45.000004	43
TTACGGT	20	7.031088E-4	45.000004	29
TTACGGG	40	6.8066583E-9	45.000004	3
CGATCGC	35	1.2108649E-7	45.000004	34
TATCGAA	20	7.031088E-4	45.000004	35
CAATAGT	20	7.031088E-4	45.000004	19
GGCTCGT	20	7.031088E-4	45.000004	8
GGTAGGC	20	7.031088E-4	45.000004	8
CTTACGA	20	7.031088E-4	45.000004	29
TATCCGG	20	7.031088E-4	45.000004	2