SRR3549702_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549702_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	645237
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2252	0.34901904261534905	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1708	0.2647089364063127	No Hit
CTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT	1122	0.17388959405613752	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1120	0.173579630430369	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	778	0.12057585042395275	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	687	0.10647250545148526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACC	60	0.0	45.000004	24
ACCTACG	30	2.1640153E-6	45.000004	39
TCGACCC	60	0.0	45.000004	25
CGTCATA	35	1.2108285E-7	45.000004	38
ACGACTT	35	1.2108285E-7	45.000004	13
AACGTCG	20	7.0309837E-4	45.0	11
TTCACGT	20	7.0309837E-4	45.0	28
GTTAGCG	25	3.8888975E-5	45.0	1
TCTACCG	20	7.0309837E-4	45.0	1
CAGATAG	20	7.0309837E-4	45.0	11
GTCAATC	20	7.0309837E-4	45.0	10
TTAGTGT	45	3.8380676E-10	45.0	21
ACGTAGC	20	7.0309837E-4	45.0	22
AACTCGC	25	3.8888975E-5	45.0	38
GATTCGC	40	6.8066583E-9	45.0	11
TCGCGAT	20	7.0309837E-4	45.0	13
GTACGTA	20	7.0309837E-4	45.0	20
TACGTAG	20	7.0309837E-4	45.0	21
TAGCGGG	100	0.0	42.75	3
CGGGTAT	95	0.0	42.63158	6