SRR3549701_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549701_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1227500
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	4742	0.38631364562118126	No Hit
TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	4480	0.364969450101833	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	4324	0.3522606924643584	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3667	0.29873727087576374	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	3015	0.2456211812627291	No Hit
TCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	1843	0.15014256619144603	No Hit
GCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	1385	0.11283095723014257	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCGG	70	0.0	45.000004	2
TCGCAAG	20	7.033474E-4	45.0	1
TTATCCG	20	7.033474E-4	45.0	1
ATCCGGT	20	7.033474E-4	45.0	16
TGCGCAT	20	7.033474E-4	45.0	13
CTACCGT	20	7.033474E-4	45.0	19
TATAGCG	20	7.033474E-4	45.0	1
ATACCGA	20	7.033474E-4	45.0	10
CGACAAA	30	2.1656233E-6	44.999996	10
ACGGGTA	30	2.1656233E-6	44.999996	5
CACTCGA	30	2.1656233E-6	44.999996	44
TGCGACA	30	2.1656233E-6	44.999996	30
CGGTAGT	50	1.0822987E-9	40.5	12
TTGGGTA	805	0.0	39.68944	5
CGAACTC	40	3.458481E-7	39.375	13
CGGTACA	40	3.458481E-7	39.375	20
TTGGGAT	4065	0.0	39.18819	5
TTTGGGC	2645	0.0	39.04537	4
CGTTTTT	1925	0.0	38.922077	1
CTTGGGA	3615	0.0	38.900414	4