SRR3549699_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549699_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684195
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2861	0.4181556427626627	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	2711	0.3962320683430893	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2347	0.34303086108492464	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2311	0.337769203224227	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1725	0.2521211058250937	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	961	0.1404570334480667	No Hit
TCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	929	0.1357800042385577	No Hit
GCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	762	0.1113717580514327	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCCG	20	7.031282E-4	45.000004	4
ACGCCTA	20	7.031282E-4	45.000004	28
CAACGTG	25	3.8891434E-5	45.000004	37
TTTCGAC	50	2.1827873E-11	45.000004	24
CGACCTA	20	7.031282E-4	45.000004	16
GTTAGTC	20	7.031282E-4	45.000004	16
CAATTCG	20	7.031282E-4	45.000004	37
AAGCGGT	25	3.8891434E-5	45.000004	23
TCTAGCG	20	7.031282E-4	45.000004	1
ATTCCGG	25	3.8891434E-5	45.000004	2
GTCACGA	20	7.031282E-4	45.000004	8
TGTTCCG	40	6.8084773E-9	45.000004	1
AAACCGG	20	7.031282E-4	45.000004	26
AACGATC	20	7.031282E-4	45.000004	23
GTTCCGC	20	7.031282E-4	45.000004	26
ACTCGTT	25	3.8891434E-5	45.000004	11
ACTCGAT	20	7.031282E-4	45.000004	34
TACTCGA	20	7.031282E-4	45.000004	33
CTATTCG	20	7.031282E-4	45.000004	11
TGGATCG	20	7.031282E-4	45.000004	27