SRR3549697_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549697_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	781552
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	3597	0.460238090363789	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	2997	0.3834677667001044	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	2801	0.3583894609699675	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	2525	0.32307511208467254	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2515	0.3217956066902778	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	1251	0.16006612483878233	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	1239	0.15853071836550864	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	1180	0.15098163653857966	No Hit
TCCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	1067	0.13652322558191907	No Hit
GCCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	794	0.10159272831494258	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCATA	35	1.211265E-7	45.000004	6
GGGCGTA	70	0.0	45.000004	7
GTTGCGT	35	1.211265E-7	45.000004	1
TAATACG	20	7.0318993E-4	45.0	22
ACGTTTA	20	7.0318993E-4	45.0	24
AACCCGA	25	3.8896556E-5	45.0	24
TAGAACG	25	3.8896556E-5	45.0	11
TAGCGGT	20	7.0318993E-4	45.0	5
ATTCGGT	20	7.0318993E-4	45.0	40
TACGGCA	20	7.0318993E-4	45.0	13
TAGCCGT	40	6.8102963E-9	45.0	44
TACGCTT	20	7.0318993E-4	45.0	14
CGCTAGC	25	3.8896556E-5	45.0	14
TGCGAAG	20	7.0318993E-4	45.0	14
ACTACGC	20	7.0318993E-4	45.0	12
CGAATTC	20	7.0318993E-4	45.0	24
ATGACGG	20	7.0318993E-4	45.0	27
TTCGGTA	20	7.0318993E-4	45.0	25
GCAATCA	20	7.0318993E-4	45.0	9
GGCGATA	55	1.8189894E-12	45.0	8