##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549692_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 431520 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03175287356322 33.0 31.0 34.0 30.0 34.0 2 32.15877131998517 33.0 31.0 34.0 30.0 34.0 3 32.25678068223952 34.0 31.0 34.0 30.0 34.0 4 35.8722469410456 37.0 35.0 37.0 35.0 37.0 5 35.09226223581757 37.0 35.0 37.0 35.0 37.0 6 26.963888116425657 35.0 17.0 37.0 0.0 37.0 7 31.44006071560994 35.0 28.0 37.0 17.0 37.0 8 34.12441601779755 35.0 32.0 37.0 30.0 37.0 9 36.83954857248795 39.0 37.0 39.0 34.0 39.0 10 37.10665090841676 39.0 37.0 39.0 34.0 39.0 11 37.173062662217276 39.0 37.0 39.0 34.0 39.0 12 36.854039210233594 39.0 35.0 39.0 33.0 39.0 13 36.67888394512421 39.0 35.0 39.0 32.0 39.0 14 37.852463385242864 40.0 36.0 41.0 33.0 41.0 15 37.78531470152021 40.0 36.0 41.0 33.0 41.0 16 38.12362810530219 40.0 37.0 41.0 34.0 41.0 17 37.86254866518354 40.0 36.0 41.0 33.0 41.0 18 37.87952817945866 40.0 36.0 41.0 33.0 41.0 19 37.90025723025584 40.0 36.0 41.0 33.0 41.0 20 37.57549592139414 40.0 35.0 41.0 32.0 41.0 21 37.72725018539118 39.0 36.0 41.0 33.0 41.0 22 37.71881488691138 39.0 36.0 41.0 33.0 41.0 23 37.597038375973305 39.0 35.0 41.0 33.0 41.0 24 37.51617538005191 39.0 35.0 41.0 33.0 41.0 25 37.469971264367814 39.0 35.0 41.0 33.0 41.0 26 37.46033787541713 39.0 35.0 41.0 33.0 41.0 27 37.32687708565072 39.0 35.0 41.0 33.0 41.0 28 37.20138116425658 39.0 35.0 41.0 32.0 41.0 29 37.2319660734149 39.0 35.0 41.0 32.0 41.0 30 36.96481275491286 39.0 35.0 41.0 31.0 41.0 31 36.87037217278458 39.0 35.0 41.0 31.0 41.0 32 36.746938728216534 39.0 35.0 41.0 31.0 41.0 33 36.644169447534296 39.0 35.0 41.0 31.0 41.0 34 36.52416805710048 39.0 35.0 41.0 30.0 41.0 35 36.56554736744531 39.0 35.0 41.0 31.0 41.0 36 36.27972052280312 39.0 35.0 41.0 30.0 41.0 37 36.28657536151279 39.0 35.0 40.0 30.0 41.0 38 35.85663005190953 38.0 35.0 40.0 29.0 41.0 39 36.07253661475714 39.0 35.0 40.0 30.0 41.0 40 36.05160826844642 39.0 35.0 40.0 30.0 41.0 41 35.74750648869114 38.0 35.0 40.0 27.0 41.0 42 35.951575824990734 38.0 35.0 40.0 29.0 41.0 43 35.89771968854283 38.0 35.0 40.0 29.0 41.0 44 35.877231646273636 38.0 35.0 40.0 29.0 41.0 45 35.6393539117538 38.0 35.0 40.0 28.0 41.0 46 35.635755005561734 38.0 35.0 40.0 28.0 41.0 47 35.354546718576195 38.0 34.0 40.0 27.0 41.0 48 35.36620550611791 38.0 34.0 40.0 28.0 41.0 49 35.44494345569151 38.0 35.0 40.0 28.0 41.0 50 35.30591397849462 38.0 34.0 40.0 27.0 41.0 51 34.34491796440489 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 4.0 12 1.0 13 4.0 14 3.0 15 8.0 16 23.0 17 57.0 18 174.0 19 326.0 20 595.0 21 1110.0 22 1706.0 23 2232.0 24 2904.0 25 3471.0 26 4254.0 27 4607.0 28 5379.0 29 6313.0 30 7999.0 31 10899.0 32 15011.0 33 22062.0 34 31875.0 35 41590.0 36 41154.0 37 61323.0 38 83859.0 39 82528.0 40 45.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.66671301446051 3.1233778272154242 39.253568780126066 16.956340378198 2 16.12370226177234 25.898683722654802 39.99374304783092 17.983870967741936 3 15.439840563589174 25.86531331108639 42.34774749721913 16.347098628105304 4 16.130886169818318 3.485585836114201 61.12184835001854 19.261679644048943 5 30.47483314794216 6.26830737856878 40.75083426028921 22.50602521319985 6 13.224647756766778 39.94924916573971 35.2736837226548 11.55241935483871 7 65.82545420837968 1.796672228401928 27.309510567296996 5.068362995921394 8 62.50625695216908 16.719271412680754 13.267519466073416 7.506952169076751 9 59.55112161661105 3.5622914349276975 12.932656655543195 23.95393029291806 10 43.10877827215425 19.725157582499072 20.97585279940675 16.190211345939932 11 34.132832777159805 19.27627919911012 27.02423989618094 19.56664812754913 12 26.59992584352985 16.272710418984058 31.286846496106786 25.840517241379313 13 22.73799592139414 21.882647385984427 39.23688357434186 16.14247311827957 14 19.10734149054505 31.36934556915091 26.651140155728587 22.872172784575454 15 12.287958843159066 20.547599184278827 45.785826844642195 21.37861512791991 16 13.953698553948831 22.452030033370413 30.639831294030408 32.95444011865035 17 15.095939933259178 23.695309603262885 35.22131071560994 25.987439747868002 18 16.06205969595847 22.62629773822766 33.59403967371153 27.717602892102335 19 17.286336670374492 25.29152762328513 29.51589729328884 27.906238413051536 20 21.78207267334075 24.033416759362254 37.243233222098624 16.94127734519837 21 20.505886169818314 32.20082499073044 28.33101594364108 18.96227289581016 22 17.07614942528736 21.181637004078606 32.9539766407119 28.788236929922135 23 18.294401186503524 30.460465331850205 29.297599184278827 21.947534297367447 24 21.962133852428625 22.045791620318873 27.776464590285503 28.215609936967002 25 15.933908045977011 34.42181127178346 25.64794215795328 23.996338524286244 26 19.029940674823877 22.902298850574713 31.114432703003338 26.953327771598072 27 23.832267334074896 27.602660363366706 26.185344827586203 22.379727474972192 28 15.321885428253616 23.909436410826846 37.90299406748239 22.865684093437153 29 26.405265109380792 17.480997404523542 31.709770114942533 24.403967371153133 30 24.145346681497962 26.3461716722284 31.31210604375232 18.19637560252132 31 24.111512791991103 20.713987764182427 30.181451612903228 24.99304783092325 32 27.069428995179827 26.695402298850574 27.332452725250278 18.902715980719318 33 24.95388394512421 20.494067482387837 26.63700407860586 27.915044493882093 34 26.32044864664442 20.204162031887282 31.755422691879865 21.71996662958843 35 24.247311827956988 18.978958101594365 27.455737856878017 29.317992213570633 36 26.63028364849833 19.611142009640343 33.87444382647386 19.88413051538747 37 23.125695216907673 20.111234705228032 38.077493511308866 18.685576566555433 38 23.451288468668892 20.537170930663702 31.099369670003707 24.9121709306637 39 22.4121709306637 20.130700778642936 39.41138301816834 18.045745272525025 40 25.21644419725621 18.655682239525397 30.36916017797553 25.758713385242864 41 18.730533926585093 21.829579162031887 35.13301816833519 24.30686874304783 42 19.841490545050057 18.227196885428253 33.95277159807193 27.97854097144976 43 25.25815721171672 18.959955506117907 31.414534668149795 24.367352614015573 44 23.546996662958843 19.118696700037077 32.696978123841305 24.637328513162775 45 20.22455506117909 18.63250834260289 30.061410826844643 31.081525769373382 46 29.336531331108638 22.70810159436411 28.77641824249166 19.178948832035594 47 18.252919911012235 19.17431405265109 40.97307193177605 21.599694104560623 48 21.379773822766033 21.76700964034112 30.24425287356322 26.608963663329625 49 19.46700037078235 15.988598442714128 40.397664071190206 24.14673711531331 50 23.339126807563957 16.90211345939933 33.38431590656285 26.374443826473858 51 20.425704486466444 18.348859844271413 28.052697441601783 33.17273822766037 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 82.0 1 266.0 2 450.0 3 2332.0 4 4214.0 5 2762.0 6 1310.0 7 1292.5 8 1275.0 9 1334.5 10 1394.0 11 1433.0 12 1472.0 13 1512.5 14 1553.0 15 1431.0 16 1309.0 17 1222.0 18 1135.0 19 1152.0 20 1169.0 21 1207.0 22 1245.0 23 1300.5 24 1356.0 25 1658.0 26 2163.0 27 2366.0 28 2981.5 29 3597.0 30 4285.5 31 4974.0 32 5654.0 33 6334.0 34 7060.0 35 7786.0 36 8544.5 37 9303.0 38 10496.0 39 11689.0 40 14116.0 41 16543.0 42 18756.5 43 20970.0 44 24935.0 45 28900.0 46 64836.0 47 100772.0 48 75937.5 49 51103.0 50 46364.5 51 41626.0 52 33440.5 53 25255.0 54 22011.0 55 18767.0 56 17083.0 57 15399.0 58 14174.5 59 12950.0 60 11925.5 61 10901.0 62 9424.0 63 7947.0 64 6590.0 65 5233.0 66 4151.5 67 3070.0 68 2732.0 69 2394.0 70 1961.0 71 1528.0 72 1284.0 73 1040.0 74 802.0 75 440.5 76 317.0 77 235.5 78 154.0 79 102.5 80 51.0 81 43.0 82 35.0 83 26.5 84 18.0 85 10.5 86 3.0 87 3.0 88 3.0 89 2.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 431520.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.23379422288806 #Duplication Level Percentage of deduplicated Percentage of total 1 74.3097713804122 23.95285879426063 2 10.175713500704875 6.560037101055697 3 3.796144382082925 3.670924105573006 4 2.0809928598704874 2.6831318249745846 5 1.4570484883851615 2.3483100573688698 6 1.0927495050225209 2.113407760923523 7 0.8540184948551502 1.9269779497991044 8 0.6719398363735741 1.7327336332661487 9 0.5464019094570842 1.585134604118949 >10 4.87250492336598 28.248086537998546 >50 0.08649376937577387 1.9216444141255202 >100 0.03820141480763345 2.1927795889876265 >500 0.005766251291718257 1.2288208567657932 >1k 0.010090939760506951 8.498124499512654 >5k 0.0 0.0 >10k+ 0.0021623442343943465 11.33702827126936 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC 19315 4.476038190582128 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG 16592 3.845012977382277 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC 12889 2.9868835743418614 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTGTCTT 4828 1.1188357434186134 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT 4390 1.0173340748980348 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTC 4073 0.9438728216536894 No Hit GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 3693 0.8558120133481647 No Hit GAATCAGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC 3366 0.7800333704115684 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTA 3316 0.7684464219503152 No Hit GAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT 2786 0.6456247682610308 No Hit CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 2035 0.47158880237300704 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2004 0.46440489432703 No Hit CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT 1766 0.40925101965146465 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGT 1226 0.28411197626992957 No Hit GCTGTATCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 1077 0.24958286985539488 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATG 1012 0.2345198368557657 No Hit TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 1005 0.2328976640711902 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTAT 846 0.1960511679644049 No Hit GAACTATCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT 806 0.1867816091954023 No Hit CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 713 0.16522988505747127 No Hit CCTGTATCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 626 0.14506859473489062 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT 602 0.13950685947348906 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC 589 0.1364942528735632 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGGTTGTCT 588 0.13626251390433816 No Hit CGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG 519 0.12027252502780869 No Hit CTGTCACTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT 496 0.11494252873563218 No Hit GAATGATCCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG 448 0.10381905821282907 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.43126622172784573 0.0 2 0.0 0.0 0.0 2.113691138301817 0.0 3 0.0 0.0 0.0 2.6666203188728215 0.0 4 0.0 0.0 0.0 3.8331942899517983 0.0 5 0.0 0.0 0.0 7.814238042269188 0.0 6 0.0 0.0 0.0 8.410734149054505 0.0 7 0.0 0.0 0.0 10.097330367074527 0.0 8 0.0 0.0 0.0 12.016129032258064 0.0 9 0.0 0.0 0.0 12.44600482017056 0.0 10 0.0 0.0 0.0 17.41981831664813 0.0 11 0.0 0.0 0.0 19.05149239896181 0.0 12 0.0 0.0 0.0 25.433120133481648 0.0 13 0.0 0.0 0.0 26.235400444938822 0.0 14 0.0 0.0 0.0 26.634918427882834 0.0 15 0.0 0.0 0.0 27.782026325546905 0.0 16 0.0 0.0 0.0 28.662402669632925 0.0 17 0.0 0.0 0.0 29.53652206154987 0.0 18 0.0 0.0 0.0 30.350157582499072 0.0 19 0.0 0.0 0.0 32.37903225806452 0.0 20 0.0 0.0 0.0 33.09464219503152 0.0 21 0.0 0.0 0.0 33.95045420837968 0.0 22 0.0 0.0 0.0 34.93997960697071 0.0 23 0.0 0.0 0.0 35.74921208750464 0.0 24 0.0 0.0 0.0 36.39460511679644 0.0 25 0.0 0.0 0.0 36.91370040786059 0.0 26 0.0 0.0 0.0 37.43325917686318 0.0 27 0.0 0.0 0.0 38.00380051909529 0.0 28 0.0 0.0 0.0 38.46449758991472 0.0 29 2.317389692250649E-4 0.0 0.0 38.971542454579165 0.0 30 2.317389692250649E-4 0.0 0.0 39.53513162773452 0.0 31 2.317389692250649E-4 0.0 0.0 40.06905821282907 0.0 32 2.317389692250649E-4 0.0 0.0 40.55640526510938 0.0 33 2.317389692250649E-4 0.0 0.0 41.03193362995921 0.0 34 2.317389692250649E-4 0.0 0.0 41.514414163885796 0.0 35 2.317389692250649E-4 0.0 0.0 42.05923248053393 0.0 36 2.317389692250649E-4 0.0 0.0 42.5757786429366 0.0 37 2.317389692250649E-4 0.0 0.0 43.05177048572488 0.0 38 2.317389692250649E-4 0.0 0.0 43.51802929180571 0.0 39 2.317389692250649E-4 0.0 0.0 43.981507230255836 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCAT 85 0.0 45.000004 17 ACTCCGT 35 1.2095734E-7 45.000004 40 TCGTTAG 40 6.7975634E-9 45.0 1 GGGTACG 25 3.886743E-5 45.0 7 TGGAACG 20 7.028385E-4 45.0 21 ACCGAAT 20 7.028385E-4 45.0 17 GGTTTAG 25 3.886743E-5 45.0 1 GCGTTCG 45 3.8380676E-10 45.0 1 ATCCGCA 25 3.886743E-5 45.0 11 CAGGGCG 90 0.0 45.0 5 ACGCTAG 20 7.028385E-4 45.0 18 GTATACT 40 6.7975634E-9 45.0 11 TAGTCGT 20 7.028385E-4 45.0 23 TGGTCGA 20 7.028385E-4 45.0 13 CGCTTTA 20 7.028385E-4 45.0 13 CCTGTTG 30 2.16234E-6 44.999996 1 ATGATCC 175 0.0 43.714287 3 ACGGCTG 2250 0.0 43.2 8 TGATCCG 125 0.0 43.199997 4 TACGGCT 2260 0.0 43.10841 7 >>END_MODULE