SRR3549687_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549687_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557400
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	3019	0.5416218155723	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2834	0.50843200574094	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	2588	0.4642985288841048	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	2006	0.3598851811984212	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	1963	0.3521707929673484	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1061	0.1903480444922856	No Hit
TCCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	812	0.1456763545030499	No Hit
CCTGTATCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	785	0.140832436311446	No Hit
CTGTCACTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	714	0.1280947255113025	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	701	0.12576246860423393	No Hit
GCTGTATCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	624	0.11194833153928956	No Hit
GCCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	607	0.1088984571223538	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGGT	20	7.030158E-4	45.0	14
CACGGCA	20	7.030158E-4	45.0	45
ACGTTAG	20	7.030158E-4	45.0	1
TTAGCGA	20	7.030158E-4	45.0	17
CCGGCAC	20	7.030158E-4	45.0	41
CAACCCG	20	7.030158E-4	45.0	23
GCGCATT	20	7.030158E-4	45.0	18
ATTCCGA	25	3.8882106E-5	45.0	12
TACGATA	20	7.030158E-4	45.0	17
GGGCGTA	20	7.030158E-4	45.0	7
CGCAGTA	25	3.8882106E-5	45.0	37
AATTCCG	25	3.8882106E-5	45.0	11
GGCATAC	20	7.030158E-4	45.0	8
ACCGTAC	25	3.8882106E-5	45.0	16
CGGTCAT	20	7.030158E-4	45.0	24
CGACTGG	20	7.030158E-4	45.0	2
TGTACGA	20	7.030158E-4	45.0	15
CGATATC	20	7.030158E-4	45.0	19
TAGTACG	20	7.030158E-4	45.0	19
GTACGAT	20	7.030158E-4	45.0	16