SRR3549686_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549686_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1435326
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGCT	9975	0.6949640708800648	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8282	0.5770117729352078	No Hit
CCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	7886	0.5494222218506458	No Hit
TCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	7828	0.5453813280049271	No Hit
GCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	5413	0.3771268687392272	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCC	3625	0.2525558653574171	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	3608	0.2513714654371202	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	2605	0.1814918701396059	No Hit
TTCCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCT	2486	0.17320107069752794	No Hit
TCTGTATCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	2288	0.15940629515524696	No Hit
CCTGTATCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	2213	0.15418100138923144	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	1916	0.13348883807580994	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCT	1649	0.1148867922687947	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTC	1587	0.11056721608888852	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCT	1565	0.10903446325085729	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	1511	0.10527225173932611	No Hit
TTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	1485	0.10346081656710741	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGCA	20	7.0338725E-4	45.000004	11
GTTTACG	40	6.8175723E-9	45.000004	1
TTGTACG	40	6.8175723E-9	45.000004	1
GCCGAAG	20	7.0338725E-4	45.000004	1
TGCGACT	20	7.0338725E-4	45.000004	2
CGCTAAA	20	7.0338725E-4	45.000004	18
TATTCGA	20	7.0338725E-4	45.000004	43
CGATGCA	20	7.0338725E-4	45.000004	12
CGGTCGC	20	7.0338725E-4	45.000004	11
GATTCGA	20	7.0338725E-4	45.000004	41
GCGCTAA	20	7.0338725E-4	45.000004	17
TCGCGAG	40	6.8175723E-9	45.000004	1
CGGGTCG	45	3.8562575E-10	45.0	6
GCCGGCG	35	1.2122109E-7	45.0	1
CCGTAGG	75	0.0	45.0	2
TATCTCG	25	3.891292E-5	45.0	1
TGTTACG	35	1.2122109E-7	45.0	1
GTCCGAA	25	3.891292E-5	45.0	9
GCCTATC	70	0.0	45.0	2
TTACGAG	25	3.891292E-5	45.0	1