SRR3549679_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549679_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1883411
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	6707	0.356109208239731	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	6621	0.3515430248628685	No Hit
TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	5292	0.2809795631436792	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	4904	0.260378642792253	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC	4866	0.2583610268815463	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG	4075	0.21636275884552017	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3625	0.19246993885030936	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	3354	0.17808115169763797	No Hit
TCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	2060	0.10937602042252062	No Hit
CCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	1976	0.10491602735674793	No Hit
TCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	1920	0.10194269864623282	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGCG	25	3.8917577E-5	45.0	1
TAGGGCG	950	0.0	44.05263	5
CGTTTAT	930	0.0	43.064518	1
TTAGGGA	3690	0.0	42.073174	4
GCGATAT	75	0.0	42.0	9
AGGGCGA	1215	0.0	41.296295	6
TTAGGGT	2315	0.0	41.015118	4
TAGGGAT	1660	0.0	40.933735	5
TATTGCG	110	0.0	40.909092	1
TCGCTAG	165	0.0	40.90909	1
GTTAGGG	2775	0.0	40.864864	3
TTTAGGG	7820	0.0	40.597828	3
CTAGGGT	1140	0.0	40.46052	4
TTCGTAG	380	0.0	40.263157	1
AGGGCGC	190	0.0	40.263157	6
CTTAGGG	3600	0.0	40.187504	3
TAGGGTC	1195	0.0	40.104603	5
CGTTTTT	2615	0.0	40.00956	1
TTCGCAG	180	0.0	40.000004	1
TAGGGTA	1370	0.0	39.908756	5