SRR3549662_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549662_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1501547
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6180	0.4115755284383372	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	6052	0.40305098674899953	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	5157	0.34344579290558336	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	4538	0.3022216420798017	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	4516	0.30075648647694675	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3192	0.2125807583778596	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGC	1820	0.12120832714527086	No Hit
TCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	1701	0.11328316729346467	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	25	3.8913786E-5	45.0	30
TTATGCG	25	3.8913786E-5	45.0	1
CCGTACC	20	7.033979E-4	45.0	31
CGTAAGG	25	3.8913786E-5	45.0	2
TCGTTAG	90	0.0	40.0	1
TTTGGGC	4125	0.0	39.381817	4
ACGAACG	40	3.4591721E-7	39.375	21
TCGTTTG	450	0.0	39.000004	1
ATACTCG	75	0.0	39.000004	44
CGTTTTT	3820	0.0	38.87434	1
CCGTTAT	35	6.249569E-6	38.571426	15
TTGGGAT	5190	0.0	38.540462	5
TTTGGGA	9630	0.0	38.457943	4
CGGGTAC	200	0.0	38.25	6
TGGGCGA	1960	0.0	38.22704	6
CGACCAA	330	0.0	38.18182	29
TTGGGAC	3575	0.0	37.510487	5
TTATCCG	30	1.1400885E-4	37.499996	1
CATACGA	265	0.0	37.35849	18
CGGGATC	615	0.0	37.317074	6