SRR3549655_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549655_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504917
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	4247	0.8411283438664177	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	3621	0.7171475707888624	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	2502	0.49552698760390324	No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1870	0.3703579004073937	No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	1416	0.28044213207319224	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1411	0.2794518703073971	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAAGCAGT	1330	0.2634096297015153	No Hit
TCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1051	0.20815302317014478	No Hit
GAATCAGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	954	0.1889419449137185	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCT	811	0.1606204584119766	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTC	780	0.15448083546404656	No Hit
GCTGTATCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	672	0.1330911813228709	No Hit
CCTGTATCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	628	0.1243768777838734	No Hit
CTGTCACTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	619	0.12259440660544209	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTA	616	0.12200024954596499	No Hit
GAATATGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	538	0.10655216599956031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCAATC	35	1.2101191E-7	45.000004	27
GGGTACG	35	1.2101191E-7	45.000004	7
CTACGAA	70	0.0	45.000004	11
TACGAAT	70	0.0	45.000004	12
TTGCGTA	35	1.2101191E-7	45.000004	36
GCGACCG	20	7.029526E-4	45.0	33
CAACGTC	25	3.8876875E-5	45.0	19
ACCGCGA	25	3.8876875E-5	45.0	11
GACAACG	20	7.029526E-4	45.0	26
ACCGAAC	20	7.029526E-4	45.0	11
TTACTCG	20	7.029526E-4	45.0	39
CGCGACT	25	3.8876875E-5	45.0	13
TCGGCAC	20	7.029526E-4	45.0	27
TACGCTT	20	7.029526E-4	45.0	39
GCCGATT	45	3.8380676E-10	45.0	9
CGTACTA	25	3.8876875E-5	45.0	11
ACGTATA	20	7.029526E-4	45.0	14
CAATCCG	20	7.029526E-4	45.0	13
TTCGATT	20	7.029526E-4	45.0	37
CCGCACG	20	7.029526E-4	45.0	39