##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549655_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 504917 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.937847210531633 33.0 31.0 34.0 30.0 34.0 2 32.115684360003726 33.0 31.0 34.0 30.0 34.0 3 32.20940273351858 34.0 31.0 34.0 30.0 34.0 4 35.68956680008794 37.0 35.0 37.0 35.0 37.0 5 29.253297076549217 37.0 35.0 37.0 0.0 37.0 6 23.503460964871454 35.0 10.0 37.0 0.0 37.0 7 30.257491825389124 35.0 19.0 37.0 17.0 37.0 8 33.92656416797216 35.0 32.0 37.0 32.0 37.0 9 36.75040848297839 37.0 35.0 39.0 34.0 39.0 10 36.97754680472236 39.0 37.0 39.0 34.0 39.0 11 37.14692909923809 39.0 37.0 39.0 34.0 39.0 12 37.093647074667714 39.0 37.0 39.0 34.0 39.0 13 36.938334419320405 39.0 37.0 39.0 33.0 39.0 14 38.12319450523552 40.0 37.0 41.0 33.0 41.0 15 37.98514409298954 40.0 37.0 41.0 33.0 41.0 16 38.26432463157311 40.0 37.0 41.0 34.0 41.0 17 38.25593909494036 40.0 37.0 41.0 34.0 41.0 18 38.34591427898051 40.0 37.0 41.0 34.0 41.0 19 38.33691676057649 40.0 37.0 41.0 34.0 41.0 20 38.19618075842168 40.0 37.0 41.0 34.0 41.0 21 38.12365200617131 40.0 37.0 41.0 34.0 41.0 22 38.179175983379444 40.0 37.0 41.0 34.0 41.0 23 38.113846434166405 40.0 37.0 41.0 34.0 41.0 24 38.11359490767789 40.0 37.0 41.0 34.0 41.0 25 37.88803110214154 40.0 36.0 41.0 33.0 41.0 26 37.732769940406044 40.0 36.0 41.0 33.0 41.0 27 36.785461768964005 39.0 35.0 41.0 32.0 41.0 28 37.13814349685196 39.0 36.0 41.0 32.0 41.0 29 37.447348772174436 39.0 36.0 41.0 32.0 41.0 30 37.52930481643518 39.0 36.0 41.0 33.0 41.0 31 37.508966820289274 39.0 36.0 41.0 33.0 41.0 32 37.43108669345655 39.0 35.0 41.0 33.0 41.0 33 36.22628273557832 39.0 35.0 41.0 31.0 41.0 34 36.657862579394234 39.0 35.0 41.0 31.0 41.0 35 37.01611750050008 39.0 35.0 41.0 31.0 41.0 36 37.15813094033277 39.0 35.0 41.0 32.0 41.0 37 37.17258678158984 39.0 35.0 41.0 33.0 41.0 38 37.09128827114159 39.0 35.0 41.0 32.0 41.0 39 37.18197248260605 39.0 35.0 41.0 33.0 41.0 40 37.11489611163815 39.0 35.0 41.0 33.0 41.0 41 37.038820241742705 39.0 35.0 41.0 32.0 41.0 42 37.04272979519406 39.0 35.0 41.0 32.0 41.0 43 36.93921575229196 39.0 35.0 40.0 32.0 41.0 44 36.9790539831299 39.0 35.0 40.0 32.0 41.0 45 36.92617004378938 39.0 35.0 40.0 32.0 41.0 46 36.895499656379165 39.0 35.0 40.0 32.0 41.0 47 36.79227080886562 39.0 35.0 40.0 32.0 41.0 48 36.79507324966281 39.0 35.0 40.0 32.0 41.0 49 36.80643551316355 39.0 35.0 40.0 32.0 41.0 50 36.71261811347212 39.0 35.0 40.0 32.0 41.0 51 35.987956436404396 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 7.0 11 2.0 12 5.0 13 4.0 14 9.0 15 17.0 16 20.0 17 33.0 18 66.0 19 115.0 20 290.0 21 600.0 22 952.0 23 1359.0 24 1819.0 25 2330.0 26 2796.0 27 3319.0 28 4242.0 29 5611.0 30 7957.0 31 11368.0 32 16600.0 33 26953.0 34 37223.0 35 50140.0 36 60631.0 37 88479.0 38 99587.0 39 82308.0 40 71.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.01569366846432 4.481924751988941 50.49463575201468 17.00774582753205 2 18.874983413115423 9.377976974433421 50.66634714220357 21.080692470247588 3 20.185297781615592 9.239340327222099 49.27661378008663 21.298748111075682 4 18.604047793993864 4.875652830069101 51.5746152337909 24.945684142146135 5 18.04712457691066 23.299671035041403 37.51784946832846 21.13535491971948 6 16.002234030543633 32.45800794982146 37.11283240611824 14.426925613516678 7 78.71471944893914 2.889385780237148 13.00748439842588 5.388410372397839 8 77.99182835990865 6.990059752394948 8.59111497533258 6.426996912363814 9 73.15697431459031 5.543485364921363 10.605307406959955 10.694232913528362 10 42.21882012291129 22.440321874684354 19.235834800571183 16.10502320183317 11 31.309304301499058 23.89521446099062 23.804110378537462 20.99137085897286 12 28.233749309292417 19.700861725788595 29.54426173014575 22.52112723477324 13 24.45431625395857 23.951065224581466 31.310888720324332 20.28372980113563 14 19.76106964114894 28.328616386455597 27.608101925663032 24.302212046732432 15 16.187412980747332 24.215861220755095 37.9537626976315 21.642963100866083 16 18.153478690557062 22.71403022675014 32.9567037750759 26.175787307616893 17 18.838145675427842 23.196881863751866 30.05008744011392 27.914885020706375 18 19.918521261910374 22.84296230865667 31.823250157946752 25.415266271486203 19 22.96199177290525 24.245767126082107 27.73901453110115 25.05322656991149 20 26.74677224177439 24.41767656862415 29.188361651518964 19.647189538082497 21 24.590180168225668 25.945056316186623 27.653852019242763 21.810911496344946 22 22.072934759574345 22.985163898224855 28.019060558468023 26.92284078373277 23 22.771267356813098 25.94683878736505 27.176545848129496 24.105348007692353 24 23.22005398907147 22.597575443092627 28.602126686168223 25.58024388166768 25 20.498616604313185 26.932743401390724 26.96839282495935 25.600247169336743 26 20.768958066375266 26.760833958848686 27.766345755837097 24.703862218938955 27 22.98674831705013 29.403446507049676 25.98664731035002 21.62315786555018 28 18.678119374075344 26.92957456374018 31.201959926086865 23.190346136097617 29 21.48293679951358 25.144726757070963 28.50765571371136 24.864680729704087 30 23.641707448947056 26.86639586308245 26.12171901520448 23.37017767276602 31 22.973082704682156 28.389814563581737 22.636591756664956 26.00051097507115 32 25.077190904643732 30.76743306325594 22.185032391462357 21.970343640637964 33 25.45131179976115 28.571230519075414 22.618568992527486 23.358888688635954 34 21.453625051246046 26.837876324227544 25.481019652735004 26.227478971791403 35 23.276102805015476 27.08049045684736 24.27824771200019 25.36515902613697 36 25.93297512264392 28.033320327895478 22.90079359577911 23.132910953681495 37 23.179057151967548 29.091315998471035 26.50950552268987 21.220121326871542 38 22.7427478179582 29.505641521279735 23.891253413927437 23.860357246834628 39 24.170309179528516 26.652499321670692 25.784831962480965 23.39235953631983 40 24.342218622070558 23.75954859907668 27.55284531913166 24.345387459721103 41 20.38077545418356 25.780078706005146 25.22988926892935 28.609256570881946 42 22.43497446114906 26.48910613031449 26.694882525246722 24.381036883289728 43 25.37367527732281 24.896369106209534 25.63530243584589 24.094653180621766 44 22.829692800995016 24.69455375834048 27.05216897034562 25.423584470318882 45 22.068775660158003 24.576712608210855 25.02668755458818 28.32782417704296 46 24.03008811349192 26.816684722439533 25.772354664231944 23.38087249983661 47 20.275213549949793 25.38694478498446 30.61037754720083 23.727464117864915 48 21.71366779094386 24.361627752680143 27.436984692533624 26.487719763842378 49 22.1355193031726 23.182225989618097 30.59156257365072 24.090692133558587 50 23.321852898595214 23.55040531414074 26.940863547870244 26.186878239393803 51 20.75113335459095 24.306371146148773 24.224377471940933 30.718118027319342 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 97.0 1 341.0 2 585.0 3 1011.5 4 1438.0 5 1051.0 6 664.0 7 690.0 8 716.0 9 756.5 10 797.0 11 824.0 12 851.0 13 836.5 14 822.0 15 772.0 16 722.0 17 670.0 18 618.0 19 671.0 20 724.0 21 920.0 22 1116.0 23 1450.0 24 1784.0 25 2019.5 26 2825.5 27 3396.0 28 4060.5 29 4725.0 30 5420.5 31 6116.0 32 7365.0 33 8614.0 34 9987.5 35 11361.0 36 12015.0 37 12669.0 38 14460.0 39 16251.0 40 19439.0 41 22627.0 42 26310.0 43 29993.0 44 34453.5 45 38914.0 46 49658.0 47 60402.0 48 58610.5 49 56819.0 50 53172.0 51 49525.0 52 42996.5 53 36468.0 54 31429.5 55 26391.0 56 24636.5 57 22882.0 58 22706.5 59 22531.0 60 20932.0 61 19333.0 62 16721.0 63 14109.0 64 11994.5 65 9880.0 66 8415.5 67 6951.0 68 5721.0 69 4491.0 70 3636.0 71 2781.0 72 2425.5 73 2070.0 74 1679.0 75 1007.0 76 726.0 77 513.5 78 301.0 79 188.0 80 75.0 81 52.0 82 29.0 83 18.5 84 8.0 85 4.5 86 1.0 87 0.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 504917.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.004982402881105 #Duplication Level Percentage of deduplicated Percentage of total 1 72.68212742727756 27.62282973877646 2 10.814646828100289 8.220209247906508 3 4.007024598180609 4.568606980252974 4 2.1799268454107996 3.313923255976223 5 1.5636372581149773 2.9713003239574483 6 1.2123878560836663 2.7646067481555896 7 0.9524299590282315 2.53379586829913 8 0.8188281851677334 2.4895640614626218 9 0.6540202924742569 2.2370426735950155 >10 4.997688622465047 34.09485121157086 >50 0.07551041098291178 1.9463566036906972 >100 0.03320315943929266 2.54229220293835 >500 0.004284278637328084 1.1434310780648187 >1k 0.004284278637328084 3.551190005353321 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC 4247 0.8411283438664177 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG 3621 0.7171475707888624 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC 2502 0.49552698760390324 No Hit CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 1870 0.3703579004073937 No Hit CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT 1416 0.28044213207319224 No Hit GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 1411 0.2794518703073971 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAAGCAGT 1330 0.2634096297015153 No Hit TCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 1051 0.20815302317014478 No Hit GAATCAGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC 954 0.1889419449137185 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCT 811 0.1606204584119766 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTC 780 0.15448083546404656 No Hit GCTGTATCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 672 0.1330911813228709 No Hit CCTGTATCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 628 0.1243768777838734 No Hit CTGTCACTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT 619 0.12259440660544209 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTA 616 0.12200024954596499 No Hit GAATATGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC 538 0.10655216599956031 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.31371492740390994 0.0 2 0.0 0.0 0.0 1.2798143061136782 0.0 3 0.0 0.0 0.0 1.733948351907343 0.0 4 0.0 0.0 0.0 2.261757873076169 0.0 5 0.0 0.0 0.0 3.5225591532865796 0.0 6 0.0 0.0 0.0 4.109190223343639 0.0 7 0.0 0.0 0.0 5.039640178484781 0.0 8 0.0 0.0 0.0 6.328168788137456 0.0 9 0.0 0.0 0.0 6.820130833384497 0.0 10 0.0 0.0 0.0 8.705193130752184 0.0 11 0.0 0.0 0.0 10.514599429213119 0.0 12 0.0 0.0 0.0 13.157211977414109 0.0 13 0.0 0.0 0.0 13.738099529229556 0.0 14 0.0 0.0 0.0 13.965265578302969 0.0 15 0.0 0.0 0.0 14.451880210014716 0.0 16 0.0 0.0 0.0 15.223690230275471 0.0 17 0.0 0.0 0.0 16.289013837917913 0.0 18 0.0 0.0 0.0 17.45653245979042 0.0 19 0.0 0.0 0.0 18.480265073269468 0.0 20 0.0 0.0 0.0 19.274653061790353 0.0 21 0.0 0.0 0.0 20.280560963485087 0.0 22 3.961047063180681E-4 0.0 0.0 21.32152413168897 0.0 23 3.961047063180681E-4 0.0 0.0 22.27118516508654 0.0 24 3.961047063180681E-4 0.0 0.0 23.042599080640976 0.0 25 3.961047063180681E-4 0.0 0.0 23.72924658904335 0.0 26 3.961047063180681E-4 0.0 0.0 24.32716664323047 0.0 27 3.961047063180681E-4 0.0 0.0 24.924690592711276 0.0 28 3.961047063180681E-4 0.0 0.0 25.533701578675306 0.0 29 3.961047063180681E-4 0.0 0.0 26.157170386419946 0.0 30 3.961047063180681E-4 0.0 0.0 26.85966208307504 0.0 31 3.961047063180681E-4 0.0 0.0 27.53442645028787 0.0 32 3.961047063180681E-4 0.0 0.0 28.196119362192203 0.0 33 3.961047063180681E-4 0.0 0.0 28.77680886165449 0.0 34 3.961047063180681E-4 0.0 0.0 29.387206214090632 0.0 35 3.961047063180681E-4 0.0 0.0 30.05979200541871 0.0 36 3.961047063180681E-4 0.0 0.0 30.685241336694943 0.0 37 3.961047063180681E-4 0.0 0.0 31.332674479171825 0.0 38 3.961047063180681E-4 0.0 0.0 31.904847727448274 0.0 39 3.961047063180681E-4 0.0 0.0 32.555053602869386 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCAATC 35 1.2101191E-7 45.000004 27 GGGTACG 35 1.2101191E-7 45.000004 7 CTACGAA 70 0.0 45.000004 11 TACGAAT 70 0.0 45.000004 12 TTGCGTA 35 1.2101191E-7 45.000004 36 GCGACCG 20 7.029526E-4 45.0 33 CAACGTC 25 3.8876875E-5 45.0 19 ACCGCGA 25 3.8876875E-5 45.0 11 GACAACG 20 7.029526E-4 45.0 26 ACCGAAC 20 7.029526E-4 45.0 11 TTACTCG 20 7.029526E-4 45.0 39 CGCGACT 25 3.8876875E-5 45.0 13 TCGGCAC 20 7.029526E-4 45.0 27 TACGCTT 20 7.029526E-4 45.0 39 GCCGATT 45 3.8380676E-10 45.0 9 CGTACTA 25 3.8876875E-5 45.0 11 ACGTATA 20 7.029526E-4 45.0 14 CAATCCG 20 7.029526E-4 45.0 13 TTCGATT 20 7.029526E-4 45.0 37 CCGCACG 20 7.029526E-4 45.0 39 >>END_MODULE