SRR3549649_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549649_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	785270
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	4747	0.6045054567218919	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	4304	0.548091739147045	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2967	0.37783182854304886	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2428	0.30919301641473634	No Hit
CTGTCACTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	1717	0.2186509098781311	No Hit
CCTGTATCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	1697	0.21610401517949243	No Hit
TCTGTATCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	1085	0.13816903740114866	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1034	0.13167445591962001	No Hit
TCCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	971	0.12365173761890816	No Hit
GCTGTATCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	855	0.10887974836680378	No Hit
CTGTATCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	803	0.10225782215034321	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAA	20	7.0319197E-4	45.0	10
TGACGTG	25	3.8896735E-5	45.0	20
TGCGCGA	25	3.8896735E-5	45.0	12
CGAGGTC	25	3.8896735E-5	45.0	16
TCCACGA	20	7.0319197E-4	45.0	31
TATTACG	20	7.0319197E-4	45.0	1
AACGAAC	20	7.0319197E-4	45.0	20
TTAGTAG	40	6.8102963E-9	45.0	1
GCGGAAT	20	7.0319197E-4	45.0	5
TCGACAA	25	3.8896735E-5	45.0	19
GTTATCC	25	3.8896735E-5	45.0	26
TGCGTTA	20	7.0319197E-4	45.0	34
CGCTTCA	20	7.0319197E-4	45.0	24
GTACGCT	25	3.8896735E-5	45.0	32
TTTCGCG	120	0.0	43.124996	1
ACGGGCG	95	0.0	42.63158	5
CGTTAGG	180	0.0	42.5	2
TTATGGG	2035	0.0	41.793613	3
TTGTTAG	350	0.0	41.785713	1
TTGCGAG	65	0.0	41.53846	1