SRR3549643_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549643_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636003
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	2022	0.31792302866495914	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	1777	0.2794011977930922	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC	1331	0.2092757424100201	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1208	0.18993621099271543	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGGATCAT	910	0.14308108609550585	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	895	0.1407226066543711	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	824	0.12955913729966684	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	753	0.11839566794496252	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	735	0.11556549261560088	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	20	7.030908E-4	45.0	39
GCCGATA	20	7.030908E-4	45.0	9
ACGCGCC	20	7.030908E-4	45.0	40
CGTTCAT	140	0.0	41.785713	17
TCGTTTG	245	0.0	41.32653	1
TTTCGCG	210	0.0	40.714287	1
CGGGCGA	260	0.0	40.673077	6
TTTGTCG	205	0.0	40.609756	1
TCGTTGA	50	1.0804797E-9	40.500004	24
TTAATCG	50	1.0804797E-9	40.500004	20
GGCCGAT	250	0.0	40.500004	8
CGATGAA	615	0.0	40.2439	19
CCGATGA	620	0.0	39.55645	18
TGTTTCG	165	0.0	39.545452	1
TTGGGAC	1190	0.0	39.516808	5
CGGTAGT	115	0.0	39.130436	12
TCGTTCA	150	0.0	39.0	16
TGGGACC	660	0.0	38.863636	6
TTGGGCA	915	0.0	38.60656	5
TCGAATG	70	0.0	38.571426	44