SRR3549642_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549642_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432229
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1479	0.3421797241739911	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	970	0.22441807467800634	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC	750	0.173519129905675	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	746	0.17259369454617807	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	734	0.16981738846768726	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG	618	0.1429797630422762	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	531	0.1228515439732179	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC	441	0.1020292483845369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGG	20	7.028395E-4	45.000004	4
GCGACTC	20	7.028395E-4	45.000004	31
GACCGGA	20	7.028395E-4	45.000004	28
ATCGTCG	20	7.028395E-4	45.000004	21
CATACTC	20	7.028395E-4	45.000004	30
GCGATGA	20	7.028395E-4	45.000004	9
GCGATAT	20	7.028395E-4	45.000004	9
TACCGAA	20	7.028395E-4	45.000004	30
CGAACGA	25	3.886753E-5	45.0	22
TCTAGCG	25	3.886753E-5	45.0	1
CGCTAGA	25	3.886753E-5	45.0	24
GTCGTTT	25	3.886753E-5	45.0	9
CGGGACG	35	1.2095734E-7	45.0	6
CTAGCGG	55	1.8189894E-12	45.0	2
TAGCGGG	150	0.0	40.5	3
TCGTCTT	50	1.0786607E-9	40.5	38
GGCGATA	45	1.9235813E-8	40.0	8
TGTTTCG	125	0.0	39.6	1
CGTTTGG	285	0.0	39.473682	2
TTTAGCG	40	3.4515506E-7	39.375004	1