SRR3549639_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549639_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	420416
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGC	3979	0.9464435226061805	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCG	3548	0.8439260161363982	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	2480	0.5898919165778658	No Hit
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	2151	0.511636093773786	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	2049	0.4873744101080834	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	1699	0.4041235347845943	No Hit
TCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	1614	0.3839054650631755	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAAGTCCTT	1478	0.35155655350890547	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTA	782	0.18600624143705283	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTC	748	0.1779190135484853	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCT	653	0.15532234738925255	No Hit
GAACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCT	610	0.14509438270665245	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCC	444	0.10560968183894047	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	20	7.028176E-4	45.000004	17
TTAGGCG	20	7.028176E-4	45.000004	1
GCACGAA	20	7.028176E-4	45.000004	34
CGATTAT	20	7.028176E-4	45.000004	10
TCGATGG	20	7.028176E-4	45.000004	2
TCGGCAT	20	7.028176E-4	45.000004	21
TCCGTTG	20	7.028176E-4	45.000004	1
ACGTCAG	20	7.028176E-4	45.000004	12
GCTCGCG	20	7.028176E-4	45.000004	1
GCAAACG	25	3.8865714E-5	45.0	10
GTTCGTA	25	3.8865714E-5	45.0	32
TGCGTCG	25	3.8865714E-5	45.0	1
TGTTGCG	60	0.0	44.999996	1
TGCACGG	30	2.1622054E-6	44.999996	2
CGATGAA	255	0.0	43.235294	19
CTTTGCG	170	0.0	42.35294	1
GCGCGAC	70	0.0	41.785713	9
TCAGACG	70	0.0	41.785713	22
TTTCGCG	135	0.0	41.666668	1
CGACCCG	65	0.0	41.538464	32