SRR3549637_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549637_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	285073
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGC	4150	1.4557674700866094	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCG	4109	1.441385189056838	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	2749	0.9643144036790576	No Hit
GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	1850	0.6489565830506572	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGGAATATT	1717	0.6023018665394478	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	1709	0.5994955678019314	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	1393	0.4886467676700354	No Hit
TCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	1182	0.4146306384680415	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGGAATATTCGTA	873	0.3062373497314723	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTC	772	0.27080782817032834	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCT	769	0.26975546614375967	No Hit
GAACTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCT	721	0.25291767371866153	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGC	326	0.11435667355379148	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	290	0.10172832923496788	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC	286	0.10032517986620972	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCC	20	7.024351E-4	45.000004	30
GAGCTAG	20	7.024351E-4	45.000004	45
CCGATCG	20	7.024351E-4	45.000004	40
TTAGCGT	20	7.024351E-4	45.000004	28
CGGCATG	20	7.024351E-4	45.000004	5
TAGCGTC	20	7.024351E-4	45.000004	29
CGATTCG	20	7.024351E-4	45.000004	10
CCTCCGC	20	7.024351E-4	45.000004	45
TACGAGA	20	7.024351E-4	45.000004	35
ACGGATG	20	7.024351E-4	45.000004	20
CTGCCCG	20	7.024351E-4	45.000004	1
GACGGAT	20	7.024351E-4	45.000004	19
TCATCGA	30	2.1597389E-6	45.000004	16
CATCGAC	30	2.1597389E-6	45.000004	17
ACCAACG	30	2.1597389E-6	45.000004	36
TTCATCG	30	2.1597389E-6	45.000004	15
GTCCAAC	20	7.024351E-4	45.000004	8
CGATCGA	20	7.024351E-4	45.000004	41
CTTAGTT	20	7.024351E-4	45.000004	26
TCGACAA	30	2.1597389E-6	45.000004	19