##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549637_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 285073 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.777393860519936 31.0 30.0 31.0 25.0 34.0 2 29.65261178715627 31.0 30.0 33.0 25.0 34.0 3 29.677261613691932 31.0 30.0 33.0 25.0 34.0 4 33.7800949230548 35.0 33.0 37.0 28.0 37.0 5 34.349773566770615 35.0 35.0 37.0 32.0 37.0 6 33.55568222876246 35.0 33.0 37.0 28.0 37.0 7 34.40056406604624 35.0 35.0 37.0 32.0 37.0 8 34.05329512089886 35.0 35.0 37.0 30.0 37.0 9 35.69528857520705 37.0 35.0 39.0 30.0 39.0 10 35.20258670586131 37.0 34.0 39.0 30.0 39.0 11 35.37175740950563 37.0 34.0 39.0 30.0 39.0 12 35.3859467574972 37.0 35.0 39.0 30.0 39.0 13 35.22735229221989 37.0 34.0 39.0 29.0 39.0 14 35.9222023832492 38.0 34.0 40.0 29.0 41.0 15 36.08632525703943 38.0 34.0 40.0 30.0 41.0 16 36.44337064541363 38.0 35.0 40.0 31.0 41.0 17 36.09629112543103 38.0 34.0 40.0 30.0 41.0 18 36.2608068810445 38.0 35.0 40.0 30.0 41.0 19 36.26441648279563 38.0 34.0 40.0 30.0 41.0 20 36.15446569825974 38.0 34.0 40.0 30.0 41.0 21 36.01071304543047 38.0 34.0 40.0 30.0 41.0 22 36.21581138866185 38.0 34.0 40.0 30.0 41.0 23 36.19760201772879 38.0 34.0 40.0 30.0 41.0 24 36.08831422126964 38.0 34.0 40.0 30.0 41.0 25 35.750951510665686 38.0 34.0 40.0 29.0 41.0 26 35.816008531148164 38.0 34.0 40.0 29.0 41.0 27 35.686413655449655 38.0 34.0 40.0 29.0 41.0 28 35.58587449530471 38.0 34.0 40.0 28.0 41.0 29 35.67237865388865 38.0 34.0 40.0 29.0 41.0 30 35.28187166094299 38.0 34.0 40.0 27.0 41.0 31 35.517456932084066 38.0 34.0 40.0 29.0 41.0 32 35.39754729490341 38.0 34.0 40.0 27.0 41.0 33 35.42426676675799 38.0 34.0 40.0 28.0 41.0 34 35.40191459731367 38.0 34.0 40.0 27.0 41.0 35 35.41201727276873 38.0 34.0 40.0 28.0 41.0 36 35.18522974816977 38.0 34.0 40.0 27.0 41.0 37 35.16870064860579 38.0 34.0 40.0 27.0 41.0 38 35.01974932736527 37.0 33.0 40.0 26.0 41.0 39 35.05735373044799 37.0 33.0 40.0 27.0 41.0 40 34.91780000210473 37.0 33.0 40.0 26.0 41.0 41 34.83752231884465 37.0 33.0 40.0 26.0 41.0 42 35.08606567440621 37.0 34.0 40.0 27.0 41.0 43 35.0805372658933 37.0 33.0 40.0 27.0 41.0 44 35.075093046342516 37.0 33.0 40.0 27.0 41.0 45 35.13508469760377 37.0 34.0 40.0 27.0 41.0 46 35.008874919757396 37.0 33.0 40.0 27.0 41.0 47 34.81906388889863 37.0 33.0 40.0 27.0 41.0 48 34.84687430938742 36.0 33.0 40.0 27.0 41.0 49 34.85855202000891 36.0 33.0 39.0 27.0 41.0 50 34.615849273694806 36.0 33.0 39.0 26.0 41.0 51 33.603070090818846 36.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 3.0 12 5.0 13 5.0 14 7.0 15 11.0 16 22.0 17 39.0 18 105.0 19 263.0 20 517.0 21 869.0 22 1293.0 23 1657.0 24 2209.0 25 2782.0 26 3529.0 27 4473.0 28 5775.0 29 7613.0 30 10077.0 31 12363.0 32 15791.0 33 20048.0 34 26967.0 35 28220.0 36 32850.0 37 41015.0 38 46200.0 39 20362.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.63582310495908 4.359234301389469 50.75752526545833 16.24741732819313 2 18.4023039712635 11.532133874481273 50.0941864013779 19.971375752877332 3 19.94611906423969 11.921507824311668 49.57361798556861 18.55875512588004 4 19.04143850873285 4.074394979531559 52.431482462386825 24.452684049348765 5 23.572207820453006 5.299695165799637 47.126174699112156 24.0019223146352 6 19.81106593749671 12.309127837431113 49.41436053221456 18.465445692857617 7 76.86838108133706 2.103671691110698 16.243207880086853 4.784739347465386 8 76.8434751800416 8.537813121551322 7.975501012021483 6.643210686385592 9 70.98041554268556 5.365993973473461 10.454164371932803 13.199426111908178 10 40.12516092369323 28.178396410743918 16.81814833393552 14.878294331627337 11 30.197528352386932 23.538532235602812 27.934599207922183 18.329340204088076 12 26.210128633718384 20.461776457258317 31.086423477495238 22.241671431528065 13 23.787942035899576 24.281149039018075 34.317174899060944 17.613734026021405 14 18.920767663019646 29.131134832130716 29.578388693422387 22.369708811427248 15 15.084908076176978 25.24897131611903 38.871797750049986 20.794322857654006 16 17.69371354004062 23.837753838490492 32.10300519516054 26.36552742630835 17 17.622503709576144 26.175049899499424 31.736783209914655 24.465663181009774 18 18.72502832607788 23.86932469928755 32.44186576771564 24.96378120691893 19 20.294100107691715 26.38096206936469 29.77518039239072 23.549757430552877 20 23.855994780284348 25.500135053126744 32.81650664917407 17.827363517414838 21 23.240713782083887 29.062731300403755 28.653362472068554 19.0431924454438 22 19.96471079337573 24.455841135428468 31.318293910682527 24.26115416051327 23 19.92787812244583 27.839185050846627 28.439382193332936 23.793554633374608 24 21.132832642866912 24.113823476793662 29.981443349598173 24.77190053074125 25 18.506838599235987 29.741504807540526 26.986771809326033 24.764884783897458 26 19.928579697130207 26.476025439098056 30.071946483883078 23.52344837988866 27 23.09899569583931 27.60941934171247 27.629765007559463 21.66181995488875 28 18.913751916175855 27.89145236483287 32.08336110399792 21.111434614993353 29 22.482311548270093 24.91642491572334 29.799384719001797 22.801878817004766 30 22.436007619101073 28.9841549357533 28.567770360574308 20.01206708457132 31 23.98648767157886 26.75840924956064 26.06490267405191 23.190200404808593 32 23.858099504337485 32.5102692994426 24.88695877897942 18.744672417240498 33 22.37567219624447 27.470156766863223 26.789629323015507 23.364541713876797 34 23.377871632879998 25.967734580265407 28.74561954306441 21.908774243790187 35 22.454950135579306 26.870310411719107 26.94993913839613 23.724800314305458 36 25.850220820631908 26.416742378268022 28.127532246126428 19.60550455497364 37 22.987796108365227 27.607314617659334 29.795526058237716 19.609363215737723 38 22.284116699932998 29.70818001003252 25.077436305788343 22.93026698424614 39 20.371974897657793 29.104474994124313 30.431854296969547 20.091695811248346 40 20.718903579083253 28.616880588480846 28.794378983628754 21.869836848807147 41 18.930238921258766 25.546088194953576 30.576729469293827 24.94694341449383 42 21.909475818474565 25.962823557474753 29.434916670466865 22.69278395358382 43 24.4112911429704 23.96088019559902 28.249957028550583 23.377871632879998 44 22.21501159352166 24.404275396126607 29.25355961455487 24.127153395796867 45 21.95262266156388 24.550553717819646 27.160411543709856 26.33641207690662 46 24.36358406443262 27.48874849599927 27.67396421267535 20.473703226892763 47 18.02590915309412 26.71035138368067 34.06320486331571 21.200534599909496 48 20.66663626509701 25.087258351369652 30.477105864111998 23.768999519421342 49 20.94375826542675 22.777674490393686 34.52378864361058 21.754778600568976 50 21.32331016967584 23.595359785037516 30.431503509627362 24.649826535659287 51 19.486938433313572 23.718135354803856 27.73780750895385 29.057118702928726 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 44.0 1 144.5 2 245.0 3 405.5 4 566.0 5 438.5 6 311.0 7 331.5 8 352.0 9 420.5 10 489.0 11 515.0 12 541.0 13 543.0 14 545.0 15 592.0 16 639.0 17 673.0 18 707.0 19 684.0 20 661.0 21 959.0 22 1257.0 23 1327.5 24 1398.0 25 1764.0 26 2644.5 27 3159.0 28 3746.5 29 4334.0 30 4692.5 31 5051.0 32 5752.5 33 6454.0 34 7295.0 35 8136.0 36 8517.5 37 8899.0 38 9899.0 39 10899.0 40 12948.0 41 14997.0 42 17537.5 43 20078.0 44 30124.5 45 40171.0 46 37357.5 47 34544.0 48 32322.5 49 30101.0 50 25199.5 51 20298.0 52 17983.0 53 15668.0 54 13728.0 55 11788.0 56 10778.5 57 9769.0 58 9485.0 59 9201.0 60 8383.5 61 7566.0 62 6452.5 63 5339.0 64 4305.5 65 3272.0 66 2698.0 67 2124.0 68 1682.0 69 1240.0 70 1027.0 71 814.0 72 686.0 73 558.0 74 460.5 75 300.5 76 238.0 77 152.5 78 67.0 79 54.5 80 42.0 81 27.0 82 12.0 83 9.0 84 6.0 85 3.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 285073.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.96592024300126 #Duplication Level Percentage of deduplicated Percentage of total 1 71.91188190443202 25.86377009098927 2 11.360676707189073 8.171943847145686 3 4.1160813363229 4.441159591676863 4 2.078941043219695 2.9908411100136543 5 1.2823220730317078 2.3059946702249214 6 1.0464454125623674 2.258182334812359 7 0.8765353833221446 2.206778118071295 8 0.7915804099048582 2.277593431084829 9 0.6846370966776291 2.2161242893056787 >10 5.700978101222738 34.41804579433351 >50 0.09395020012531773 2.293769519813795 >100 0.04397668942036149 2.649643493268685 >500 0.003997880856396499 1.1269342492738204 >1k 0.007995761712792999 6.779219459985638 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGC 4150 1.4557674700866094 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCG 4109 1.441385189056838 No Hit GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC 2749 0.9643144036790576 No Hit GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC 1850 0.6489565830506572 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGGAATATT 1717 0.6023018665394478 No Hit CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC 1709 0.5994955678019314 No Hit CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT 1393 0.4886467676700354 No Hit TCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC 1182 0.4146306384680415 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGGAATATTCGTA 873 0.3062373497314723 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTC 772 0.27080782817032834 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCT 769 0.26975546614375967 No Hit GAACTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCT 721 0.25291767371866153 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGC 326 0.11435667355379148 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 290 0.10172832923496788 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC 286 0.10032517986620972 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5335475474702971 0.0 2 0.0 0.0 0.0 2.4274484079516476 0.0 3 0.0 0.0 0.0 3.028347125122337 0.0 4 0.0 0.0 0.0 4.158583941657049 0.0 5 0.0 0.0 0.0 6.492372129244089 0.0 6 0.0 0.0 0.0 7.2114861807326545 0.0 7 0.0 0.0 0.0 8.167381688199162 0.0 8 0.0 0.0 0.0 9.47827398596149 0.0 9 0.0 0.0 0.0 9.896763285193616 0.0 10 0.0 0.0 0.0 12.438217579356866 0.0 11 0.0 0.0 0.0 14.15356768266374 0.0 12 0.0 0.0 0.0 17.453424210640783 0.0 13 0.0 0.0 0.0 18.08834930000386 0.0 14 0.0 0.0 0.0 18.38792169023373 0.0 15 0.0 0.0 0.0 19.060030237868897 0.0 16 0.0 0.0 0.0 19.87982025656586 0.0 17 0.0 0.0 0.0 21.050046830110183 0.0 18 0.0 0.0 0.0 22.285870636643946 0.0 19 0.0 0.0 0.0 23.83354439038422 0.0 20 0.0 0.0 0.0 24.735418647153537 0.0 21 0.0 0.0 0.0 25.79584878259253 0.0 22 0.0 0.0 0.0 26.88188639401136 0.0 23 0.0 0.0 0.0 27.90618543320483 0.0 24 0.0 0.0 0.0 28.691949079709406 0.0 25 0.0 0.0 0.0 29.388261953955652 0.0 26 0.0 0.0 0.0 30.024940980029676 0.0 27 0.0 0.0 0.0 30.651447173180202 0.0 28 0.0 0.0 0.0 31.31794312334034 0.0 29 0.0 0.0 0.0 31.996716630477106 0.0 30 0.0 0.0 0.0 32.76774720860973 0.0 31 0.0 0.0 0.0 33.53421755129388 0.0 32 0.0 0.0 0.0 34.230530425540124 0.0 33 0.0 0.0 0.0 34.868261813640714 0.0 34 0.0 0.0 0.0 35.54773689546187 0.0 35 0.0 0.0 0.0 36.26334307352853 0.0 36 0.0 0.0 0.0 36.97473980348893 0.0 37 0.0 0.0 0.0 37.688592044844654 0.0 38 0.0 0.0 0.0 38.377538384904916 0.0 39 0.0 0.0 0.0 39.080165431310576 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTCC 20 7.024351E-4 45.000004 30 GAGCTAG 20 7.024351E-4 45.000004 45 CCGATCG 20 7.024351E-4 45.000004 40 TTAGCGT 20 7.024351E-4 45.000004 28 CGGCATG 20 7.024351E-4 45.000004 5 TAGCGTC 20 7.024351E-4 45.000004 29 CGATTCG 20 7.024351E-4 45.000004 10 CCTCCGC 20 7.024351E-4 45.000004 45 TACGAGA 20 7.024351E-4 45.000004 35 ACGGATG 20 7.024351E-4 45.000004 20 CTGCCCG 20 7.024351E-4 45.000004 1 GACGGAT 20 7.024351E-4 45.000004 19 TCATCGA 30 2.1597389E-6 45.000004 16 CATCGAC 30 2.1597389E-6 45.000004 17 ACCAACG 30 2.1597389E-6 45.000004 36 TTCATCG 30 2.1597389E-6 45.000004 15 GTCCAAC 20 7.024351E-4 45.000004 8 CGATCGA 20 7.024351E-4 45.000004 41 CTTAGTT 20 7.024351E-4 45.000004 26 TCGACAA 30 2.1597389E-6 45.000004 19 >>END_MODULE