SRR3549635_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549635_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	234337
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1502	0.6409572538694274	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	1101	0.46983617610535255	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	1083	0.4621549307194339	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	866	0.3695532502336379	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	719	0.3068230795819696	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	671	0.2863397585528534	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	543	0.23171756914187688	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTGTGGT	537	0.22915715401323733	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	259	0.11052458638627276	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	253	0.10796417125763325	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	251	0.10711069954808673	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTA	246	0.10497702027422046	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	243	0.1036968127099007	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCTCG	40	6.7757355E-9	45.000004	1
ACAGGCC	20	7.0217793E-4	45.000004	13
TGATTGA	20	7.0217793E-4	45.000004	6
AGGCACG	20	7.0217793E-4	45.000004	10
CGAGGGC	20	7.0217793E-4	45.000004	4
ATCCAGT	35	1.2063902E-7	45.000004	11
GATTGAA	20	7.0217793E-4	45.000004	7
GAACCTA	20	7.0217793E-4	45.000004	23
TTGTTCG	40	6.7757355E-9	45.000004	1
GGTCTAT	20	7.0217793E-4	45.000004	8
CACCGGT	20	7.0217793E-4	45.000004	38
AAGGCGT	20	7.0217793E-4	45.000004	14
TGACTAG	20	7.0217793E-4	45.000004	28
TGCAAGC	20	7.0217793E-4	45.000004	13
TTCCGCG	25	3.881271E-5	45.0	1
GGATAAG	25	3.881271E-5	45.0	8
TACTGCG	25	3.881271E-5	45.0	1
CGGGATC	50	2.1827873E-11	45.0	6
GTACGGG	25	3.881271E-5	45.0	3
TTTGGGC	445	0.0	43.483147	4