SRR3549633_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549633_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	264464
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	1501	0.5675630709661806	No Hit
TCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	1278	0.4832415754129106	No Hit
CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT	1004	0.3796357916389376	No Hit
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	820	0.31006110472502874	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC	409	0.1546524290640692	No Hit
TTCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCT	328	0.12402444189001151	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	315	0.11910883901022447	No Hit
TGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG	292	0.11041200314598584	No Hit
CGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG	278	0.10511827696775364	No Hit
TTCCTTGGGATTTTCTGTTTTAATCTTTTCTTTTTAAACGAGGACTCATAC	272	0.1028495371770827	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTA	20	7.0234254E-4	45.000004	15
GTACCTC	20	7.0234254E-4	45.000004	30
TCGTTCA	20	7.0234254E-4	45.000004	16
CCAATGA	20	7.0234254E-4	45.000004	35
TTCCGCG	30	2.1591422E-6	45.000004	1
CTGGTCG	20	7.0234254E-4	45.000004	1
TAGTTGG	20	7.0234254E-4	45.000004	2
GTATGAC	20	7.0234254E-4	45.000004	18
CGCTAGG	40	6.7811925E-9	45.000004	2
TACGAAA	30	2.1591422E-6	45.000004	20
GGTATGC	30	2.1591422E-6	45.000004	8
TTGCGCG	20	7.0234254E-4	45.000004	1
TTGCGAT	20	7.0234254E-4	45.000004	28
CATACGA	30	2.1591422E-6	45.000004	18
GCGATCT	60	0.0	45.000004	9
AGTTCCG	20	7.0234254E-4	45.000004	1
TCCGTAG	20	7.0234254E-4	45.000004	1
CGAGATG	20	7.0234254E-4	45.000004	18
ACACTTA	30	2.1591422E-6	45.000004	29
GATCTAC	20	7.0234254E-4	45.000004	9