##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549633_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 264464 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.00451857341642 31.0 30.0 31.0 26.0 34.0 2 30.381095347570938 31.0 30.0 33.0 27.0 34.0 3 30.383761116824974 31.0 30.0 34.0 26.0 34.0 4 34.01842594833323 35.0 33.0 37.0 30.0 37.0 5 34.38057353741908 35.0 35.0 37.0 32.0 37.0 6 33.91036965333656 35.0 35.0 37.0 30.0 37.0 7 34.41090658842035 35.0 35.0 37.0 32.0 37.0 8 34.58332703127836 35.0 35.0 37.0 32.0 37.0 9 35.82795011797447 37.0 35.0 39.0 30.0 39.0 10 35.20632675902959 37.0 34.0 39.0 30.0 39.0 11 35.38224484239821 37.0 35.0 39.0 30.0 39.0 12 35.393546947788735 37.0 35.0 39.0 30.0 39.0 13 35.38037313207091 37.0 35.0 39.0 30.0 39.0 14 35.988028616371224 38.0 34.0 40.0 29.0 41.0 15 36.30059667856494 38.0 35.0 40.0 30.0 41.0 16 36.439458678685945 38.0 35.0 40.0 31.0 41.0 17 36.26761676447456 38.0 35.0 40.0 30.0 41.0 18 36.36051409643657 38.0 35.0 40.0 30.0 41.0 19 36.38490683041926 38.0 35.0 40.0 30.0 41.0 20 36.44312647468087 38.0 35.0 40.0 30.0 41.0 21 36.08993662653518 38.0 34.0 40.0 30.0 41.0 22 36.26145713594289 38.0 34.0 40.0 30.0 41.0 23 36.34079874765563 38.0 35.0 40.0 30.0 41.0 24 36.23460281928731 38.0 34.0 40.0 30.0 41.0 25 35.73667115372981 38.0 34.0 40.0 29.0 41.0 26 35.86887440256519 38.0 34.0 40.0 29.0 41.0 27 35.9288182890677 38.0 34.0 40.0 30.0 41.0 28 35.80606056022748 38.0 34.0 40.0 29.0 41.0 29 35.99345090447093 38.0 34.0 40.0 30.0 41.0 30 35.467004960977675 38.0 34.0 40.0 28.0 41.0 31 35.652644594349326 38.0 34.0 40.0 29.0 41.0 32 35.74497096013068 38.0 34.0 40.0 29.0 41.0 33 35.74172288099704 38.0 34.0 40.0 29.0 41.0 34 35.753853076411154 38.0 34.0 40.0 29.0 41.0 35 35.82068258817835 38.0 34.0 40.0 29.0 41.0 36 35.57056915118882 38.0 34.0 40.0 29.0 41.0 37 35.654331024260394 38.0 34.0 40.0 29.0 41.0 38 35.523284832718254 38.0 34.0 40.0 29.0 41.0 39 35.48656149797326 38.0 34.0 40.0 29.0 41.0 40 35.42739654546555 38.0 34.0 40.0 28.0 41.0 41 35.36612544618549 38.0 34.0 40.0 28.0 41.0 42 35.581451539718074 38.0 34.0 40.0 29.0 41.0 43 35.556669338737976 38.0 34.0 40.0 29.0 41.0 44 35.456742694657876 38.0 34.0 40.0 28.0 41.0 45 35.58977781474984 38.0 34.0 40.0 29.0 41.0 46 35.48159673906468 38.0 34.0 40.0 29.0 41.0 47 35.44274835138242 37.0 34.0 40.0 28.0 41.0 48 35.43107568515941 37.0 34.0 40.0 28.0 41.0 49 35.45205396575715 37.0 34.0 40.0 28.0 41.0 50 35.30100883296025 37.0 34.0 40.0 28.0 41.0 51 34.19981169459737 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 7.0 12 7.0 13 7.0 14 5.0 15 14.0 16 38.0 17 48.0 18 101.0 19 170.0 20 284.0 21 493.0 22 753.0 23 1120.0 24 1604.0 25 2175.0 26 3027.0 27 3839.0 28 4991.0 29 6357.0 30 8367.0 31 10493.0 32 13419.0 33 17658.0 34 24352.0 35 26199.0 36 31387.0 37 39381.0 38 46918.0 39 21244.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.494040776816504 4.9696745114646985 57.01191844636699 16.524366265351805 2 20.802831387258756 3.7025833383749776 53.42315022082401 22.07143505354226 3 20.941980761086576 3.6617460221429003 53.4700375098312 21.926235706939316 4 20.091203339584972 4.9696745114646985 46.916026377881295 28.02309577106903 5 17.97635973138121 6.289324823038296 50.30930485812814 25.425010587452356 6 22.032110230503964 6.556279871740577 52.920246233891945 18.491363663863513 7 81.63114828483272 2.971671002480489 10.343562828967269 5.053617883719523 8 82.49780688486902 2.9637304132131406 8.054782503478734 6.483680198439107 9 76.31511283199227 6.148284832718253 11.169005989473048 6.367596345816444 10 36.880634037146834 30.029417992619035 18.333686248411883 14.756261721822254 11 28.794467299897153 26.324565914453384 26.358218888015006 18.52274789763446 12 26.00845483695323 22.768694415875128 31.600898420957108 19.621952326214533 13 23.133583398874705 26.32418779115494 31.5974953112711 18.944733498699257 14 19.068001693992375 28.93626353681408 31.082113255490352 20.913621513703188 15 16.848417932119304 27.798112408494163 35.885791638937626 19.467678020448908 16 19.008636336136487 26.390359368382843 32.940211144049854 21.66079315143082 17 19.397725210236555 25.68515941678263 28.58120575957408 26.335909613406738 18 19.982681952931213 25.59025046887289 31.949906225421987 22.477161352773912 19 22.259740456167947 26.78474196866114 29.537479581341884 21.418037993829028 20 24.14733196200617 27.66387863754613 29.036088087603606 19.15270131284409 21 23.562375219311512 26.751845241696415 29.815022082400628 19.870757456591445 22 21.551893641478614 26.59908342912457 28.558518361667375 23.290504567729446 23 20.194052876762054 27.87562768467542 28.083217375521812 23.84710206304072 24 21.61995583519874 25.307036118337468 30.414725633734648 22.658282412729143 25 19.584139996370016 27.456288946699743 27.713790912940894 25.245780143989354 26 18.203233710448302 29.410052029765865 28.553224635489137 23.833489624296693 27 19.015064432210053 29.646000967995644 29.77531913606389 21.56361546373041 28 16.573522294149676 28.96878214048037 31.486327061528225 22.97136850384173 29 17.749863875612558 25.875355435900538 30.85259241333414 25.522188275152764 30 18.78365297356162 28.397059713231293 30.175373585818864 22.643913727388227 31 20.13355314901083 29.8014096436566 27.247564885958013 22.817472321374556 32 19.430243813902838 29.37791154939803 26.230791336438987 24.96105330026015 33 19.509649706576322 30.4653941557263 27.24227115977978 22.7826849779176 34 17.609958255187852 27.861258999334503 29.6221792001936 24.906603545284046 35 16.952023715893276 27.78109686006413 27.532669852985663 27.73420957105693 36 18.86494948272733 29.185068667191 28.6734678443947 23.276514005686973 37 17.622436324036542 29.63919474862363 30.492619033214353 22.245749894125478 38 17.457574565914452 30.9259483332325 26.47165587754855 25.144821223304497 39 18.867218222517998 29.10604089781596 28.47344061951721 23.55330026014883 40 19.554646379091295 27.28121785951963 29.955305826123784 23.20882993526529 41 16.803799382902778 26.872466573900418 28.92567608445762 27.398057958739187 42 18.40401718192268 27.37612680742937 27.73345332446004 26.48640268618791 43 19.750514247685885 27.989820920805858 27.57199467602396 24.6876701554843 44 17.57970839131224 28.28059773731018 27.995870893580978 26.1438229777966 45 18.839237098433056 27.24000241998911 26.060635852138663 27.86012462943917 46 19.37390344243451 27.707362816867327 28.906769919535364 24.011963821162805 47 16.332279629741667 27.782987476556354 30.865826728779723 25.018906164922257 48 16.421516728174723 26.74655151551818 30.626474680863936 26.20545707544316 49 18.219114888982997 25.86060862726118 31.49993950027225 24.420336983483573 50 18.570769556536995 25.390601367293847 29.400598947304736 26.638030128864422 51 16.50999758001089 25.871952326214533 27.147362211870046 30.470687881904528 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 63.0 1 136.0 2 209.0 3 416.5 4 624.0 5 490.0 6 356.0 7 416.5 8 477.0 9 652.0 10 827.0 11 951.5 12 1076.0 13 1116.5 14 1157.0 15 1148.0 16 1139.0 17 997.5 18 856.0 19 911.5 20 967.0 21 1028.5 22 1090.0 23 1378.0 24 1666.0 25 1664.5 26 2213.5 27 2764.0 28 3166.5 29 3569.0 30 4294.0 31 5019.0 32 5828.5 33 6638.0 34 6889.0 35 7140.0 36 8393.0 37 9646.0 38 10785.5 39 11925.0 40 13567.5 41 15210.0 42 18023.5 43 20837.0 44 24060.0 45 27283.0 46 29285.0 47 31287.0 48 30105.5 49 28924.0 50 24766.0 51 20608.0 52 17685.5 53 14763.0 54 12876.5 55 10990.0 56 10079.5 57 9169.0 58 8484.0 59 7799.0 60 7096.5 61 6394.0 62 5403.5 63 4413.0 64 3785.0 65 3157.0 66 2489.5 67 1822.0 68 1466.0 69 1110.0 70 947.5 71 785.0 72 623.0 73 461.0 74 351.5 75 192.0 76 142.0 77 150.0 78 158.0 79 89.5 80 21.0 81 15.5 82 10.0 83 5.5 84 1.0 85 1.0 86 1.0 87 1.0 88 1.0 89 3.0 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 264464.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.65968112471965 #Duplication Level Percentage of deduplicated Percentage of total 1 71.5676882222077 28.383516937261117 2 11.51149479546126 9.13084425713727 3 4.209075939344027 5.007918287523418 4 2.2095259944226378 3.5051638550232362 5 1.482382107295613 2.9395400840166985 6 1.2018491703807246 2.8598972914385037 7 0.9532912498325848 2.646505889114204 8 0.784593361817209 2.489337803379384 9 0.7546470181788132 2.693615409242302 >10 5.196683007765183 33.61437234693888 >50 0.08384966819160689 2.2058825649188094 >100 0.040926623760189074 2.701137247028183 >500 9.982103356143677E-4 0.3246273695680946 >1k 0.0029946310068431027 1.4976406574098806 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 1501 0.5675630709661806 No Hit TCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 1278 0.4832415754129106 No Hit CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 1004 0.3796357916389376 No Hit GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 820 0.31006110472502874 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC 409 0.1546524290640692 No Hit TTCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCT 328 0.12402444189001151 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 315 0.11910883901022447 No Hit TGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG 292 0.11041200314598584 No Hit CGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG 278 0.10511827696775364 No Hit TTCCTTGGGATTTTCTGTTTTAATCTTTTCTTTTTAAACGAGGACTCATAC 272 0.1028495371770827 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.41064190211144047 0.0 2 0.0 0.0 0.0 1.95111621997701 0.0 3 0.0 0.0 0.0 2.58901022445399 0.0 4 0.0 0.0 0.0 3.5880119789460947 0.0 5 0.0 0.0 0.0 5.0562647468086395 0.0 6 0.0 0.0 0.0 5.826880029039869 0.0 7 0.0 0.0 0.0 6.625476435356041 0.0 8 0.0 0.0 0.0 7.836227236977433 0.0 9 0.0 0.0 0.0 8.37127170427733 0.0 10 0.0 0.0 0.0 9.396363966362152 0.0 11 0.0 0.0 0.0 11.40003932482304 0.0 12 0.0 0.0 0.0 13.277043378304798 0.0 13 0.0 0.0 0.0 13.874100066549701 0.0 14 0.0 0.0 0.0 14.075261661322523 0.0 15 0.0 0.0 0.0 14.411791396938714 0.0 16 0.0 0.0 0.0 15.2482001330994 0.0 17 0.0 0.0 0.0 16.511131949906225 0.0 18 0.0 0.0 0.0 17.97484723818743 0.0 19 0.0 0.0 0.0 18.88423377094803 0.0 20 0.0 0.0 0.0 19.841263839312724 0.0 21 0.0 0.0 0.0 21.05390525742634 0.0 22 0.0 0.0 0.0 22.247640510617703 0.0 23 0.0 0.0 0.0 23.382010405953174 0.0 24 0.0 0.0 0.0 24.32769677536451 0.0 25 0.0 0.0 0.0 25.144064976707604 0.0 26 0.0 0.0 0.0 25.917705245326395 0.0 27 0.0 0.0 0.0 26.618367717345272 0.0 28 0.0 0.0 0.0 27.383311150099825 0.0 29 0.0 0.0 0.0 28.162623268195293 0.0 30 0.0 0.0 0.0 29.01075382660778 0.0 31 0.0 0.0 0.0 29.875521810151856 0.0 32 0.0 0.0 0.0 30.635927763325064 0.0 33 0.0 0.0 0.0 31.37818379817291 0.0 34 0.0 0.0 0.0 32.13140540867566 0.0 35 0.0 0.0 0.0 32.9095831568758 0.0 36 0.0 0.0 0.0 33.66318289067699 0.0 37 0.0 0.0 0.0 34.418295117671974 0.0 38 0.0 0.0 0.0 35.173785467965395 0.0 39 0.0 0.0 0.0 35.95082884627019 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTA 20 7.0234254E-4 45.000004 15 GTACCTC 20 7.0234254E-4 45.000004 30 TCGTTCA 20 7.0234254E-4 45.000004 16 CCAATGA 20 7.0234254E-4 45.000004 35 TTCCGCG 30 2.1591422E-6 45.000004 1 CTGGTCG 20 7.0234254E-4 45.000004 1 TAGTTGG 20 7.0234254E-4 45.000004 2 GTATGAC 20 7.0234254E-4 45.000004 18 CGCTAGG 40 6.7811925E-9 45.000004 2 TACGAAA 30 2.1591422E-6 45.000004 20 GGTATGC 30 2.1591422E-6 45.000004 8 TTGCGCG 20 7.0234254E-4 45.000004 1 TTGCGAT 20 7.0234254E-4 45.000004 28 CATACGA 30 2.1591422E-6 45.000004 18 GCGATCT 60 0.0 45.000004 9 AGTTCCG 20 7.0234254E-4 45.000004 1 TCCGTAG 20 7.0234254E-4 45.000004 1 CGAGATG 20 7.0234254E-4 45.000004 18 ACACTTA 30 2.1591422E-6 45.000004 29 GATCTAC 20 7.0234254E-4 45.000004 9 >>END_MODULE