SRR3549630_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549630_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167790
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1955	1.165146909827761	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	1292	0.7700101317122594	TruSeq Adapter, Index 21 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1168	0.6961082305262531	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	953	0.5679718695989034	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	357	0.2127659574468085	No Hit
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	356	0.2121699743727278	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC	315	0.18773466833541927	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC	305	0.1817748375946123	No Hit
TTCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	304	0.18117885452053162	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	275	0.16389534537219141	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	239	0.14243995470528636	No Hit
TGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	222	0.13230824244591452	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	187	0.11144883485309016	No Hit
TCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	172	0.10250908874187972	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAC	20	7.0160505E-4	45.000004	39
CTGTCGG	20	7.0160505E-4	45.000004	2
TCACCGA	20	7.0160505E-4	45.000004	13
CTACTGG	35	1.2036435E-7	45.000004	2
GGATGCA	40	6.7557266E-9	45.000004	8
TTTCGCG	20	7.0160505E-4	45.000004	1
ACCGAGT	20	7.0160505E-4	45.000004	15
GCCATTC	20	7.0160505E-4	45.000004	35
AGGCGCA	20	7.0160505E-4	45.000004	23
GCGCATA	20	7.0160505E-4	45.000004	25
ACAGGCG	20	7.0160505E-4	45.000004	33
ATCCCTA	20	7.0160505E-4	45.000004	21
CGGGCAC	35	1.2036435E-7	45.000004	6
TAGGGAT	20	7.0160505E-4	45.000004	5
AGTTCGT	20	7.0160505E-4	45.000004	19
TTCGGTG	20	7.0160505E-4	45.000004	1
CGATGTG	20	7.0160505E-4	45.000004	10
TAGGCGC	20	7.0160505E-4	45.000004	22
CACACCG	20	7.0160505E-4	45.000004	17
GGCGCAT	20	7.0160505E-4	45.000004	24