SRR3549622_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549622_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	933290
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	7230	0.7746788243739888	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC	6210	0.665388035873094	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG	5331	0.5712050916649701	No Hit
CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT	5010	0.5368106376367474	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC	4938	0.5290959937425667	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	4372	0.46845032090775646	No Hit
TCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	3729	0.39955426501944735	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG	1455	0.15590009536157037	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1450	0.15536435620225225	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT	1412	0.1512927385914346	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT	1383	0.14818545146738957	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG	1301	0.13939932925457255	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC	1178	0.126220145935347	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT	1142	0.12236282398825658	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA	1065	0.11411244093475767	No Hit
GCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG	1048	0.11229092779307612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATT	20	7.032603E-4	45.000004	9
GTCGATA	20	7.032603E-4	45.000004	43
CCGATCG	20	7.032603E-4	45.000004	40
GAGTACG	20	7.032603E-4	45.000004	32
CGACATA	20	7.032603E-4	45.000004	36
TCGATAT	20	7.032603E-4	45.000004	44
TTGACGT	20	7.032603E-4	45.000004	20
AATTCGC	20	7.032603E-4	45.000004	28
AGTCGAT	20	7.032603E-4	45.000004	42
AGTCGAC	20	7.032603E-4	45.000004	24
CGAAGTA	20	7.032603E-4	45.000004	45
CCGATAA	25	3.89024E-5	45.0	15
TAACGGG	25	3.89024E-5	45.0	3
GAGCGTT	25	3.89024E-5	45.0	9
TTACGAG	25	3.89024E-5	45.0	1
TATAACG	25	3.89024E-5	45.0	13
CGATAAC	25	3.89024E-5	45.0	16
CGATGAA	120	0.0	44.999996	19
TCGTGCG	105	0.0	42.857143	1
TCGACGT	60	3.6379788E-12	41.249996	26