SRR3549602_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549602_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1466949
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	6560	0.4471866438437873	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	5203	0.3546817237681746	No Hit
TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	5017	0.3420023463665063	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	4462	0.30416872024862485	No Hit
TCCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG	2099	0.14308609229087035	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1983	0.13517852358875462	No Hit
CGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG	1676	0.11425073400643103	No Hit
GCCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG	1485	0.1012305131262232	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAA	30	2.1659125E-6	45.000004	20
TTATCCG	20	7.0339255E-4	45.0	1
TCGTTTG	440	0.0	39.375004	1
CTACGGG	190	0.0	39.078945	3
TACGGGA	415	0.0	39.036144	4
TGGGCGA	1630	0.0	38.2362	6
TTTGGGA	11065	0.0	38.228645	4
TTGGGAC	4055	0.0	37.786682	5
TGTCACG	60	1.5643309E-10	37.500004	1
AACCGGT	30	1.1400755E-4	37.500004	38
CGTTATA	30	1.1400755E-4	37.500004	26
ATCGTCG	30	1.1400755E-4	37.500004	1
CGTTTTT	1445	0.0	37.370243	1
CTTTTCG	410	0.0	37.317074	1
TTGGGAT	7160	0.0	37.23813	5
GGGCGAT	2605	0.0	37.226486	7
GGCCGAT	425	0.0	37.058823	8
TCTGGGA	5000	0.0	36.81	4
GGCGATT	1375	0.0	36.654545	8
CTTGGGA	4745	0.0	36.51212	4