SRR3549591_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549591_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1642776
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3979	0.24221196316478935	No Hit
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	3817	0.23235060653430534	No Hit
CTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT	3763	0.22906348765747733	No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	3280	0.19966203548140463	No Hit
TCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	2964	0.18042630279478153	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	55	1.8189894E-12	45.0	9
TAAGCGC	20	7.0341723E-4	45.0	34
TACACCG	20	7.0341723E-4	45.0	41
TTTTGCG	1445	0.0	39.705883	1
TTGGGAC	3750	0.0	39.479996	5
CGTTTGG	930	0.0	39.435486	2
TACGGGT	40	3.4594268E-7	39.375	4
TCGACGT	40	3.4594268E-7	39.375	26
CGTTTTT	2105	0.0	39.334915	1
ACACGCG	310	0.0	39.193546	36
TTACACG	315	0.0	38.57143	34
TTTGGGA	9945	0.0	38.37104	4
GACCGAT	640	0.0	38.320312	9
TGGGCGA	1805	0.0	38.01939	6
TTTCGCG	610	0.0	37.991802	1
TAACGAC	30	1.1401356E-4	37.499996	28
TATCTCG	30	1.1401356E-4	37.499996	1
CGCAACA	30	1.1401356E-4	37.499996	23
CACGCGG	320	0.0	37.265625	37
TTGGGAT	6350	0.0	37.169292	5