##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549584_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 480013 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.58525081612373 30.0 16.0 33.0 16.0 34.0 2 26.54052911066992 30.0 16.0 33.0 16.0 34.0 3 27.59426932187253 31.0 25.0 33.0 16.0 34.0 4 31.571611602185776 35.0 28.0 35.0 19.0 37.0 5 33.35497371946177 35.0 33.0 37.0 28.0 37.0 6 31.847516629757944 35.0 30.0 37.0 17.0 37.0 7 33.09975563161831 35.0 32.0 35.0 28.0 37.0 8 32.302387643667984 35.0 32.0 37.0 17.0 37.0 9 34.27160722730426 35.0 32.0 38.0 28.0 39.0 10 33.16256226393868 35.0 31.0 37.0 27.0 39.0 11 33.539189563615984 35.0 32.0 37.0 27.0 39.0 12 33.968863343284454 35.0 32.0 39.0 26.0 39.0 13 34.10414926262414 35.0 32.0 37.0 27.0 39.0 14 34.174182782549636 36.0 32.0 39.0 25.0 40.0 15 34.74928804011558 36.0 32.0 39.0 27.0 40.0 16 34.72668031907469 36.0 32.0 39.0 27.0 40.0 17 34.054977677687894 36.0 32.0 38.0 26.0 40.0 18 34.32013716295184 36.0 32.0 39.0 27.0 40.0 19 34.2371164947616 36.0 32.0 39.0 27.0 40.0 20 34.041048888259276 36.0 32.0 39.0 25.0 40.0 21 33.69256457637606 36.0 32.0 39.0 25.0 40.0 22 34.81335297169035 37.0 33.0 39.0 27.0 40.0 23 35.321541291590016 37.0 33.0 39.0 29.0 40.0 24 35.667950659669636 37.0 34.0 39.0 30.0 40.0 25 33.86255580578026 36.0 32.0 39.0 24.0 40.0 26 34.52794820140288 36.0 33.0 39.0 27.0 40.0 27 34.69663946601446 37.0 33.0 39.0 27.0 40.0 28 34.8835802363686 37.0 33.0 39.0 27.0 40.0 29 35.46326037003165 38.0 34.0 40.0 28.0 40.0 30 33.63078708284984 36.0 32.0 39.0 23.0 40.0 31 34.29742111151156 36.0 32.0 39.0 25.0 40.0 32 34.45067529421078 37.0 33.0 39.0 26.0 40.0 33 35.05488393022689 37.0 34.0 39.0 27.0 40.0 34 35.29821692329166 38.0 34.0 40.0 27.0 40.0 35 35.50183224204344 38.0 35.0 40.0 27.0 41.0 36 35.281159051942346 38.0 34.0 40.0 26.0 41.0 37 35.475143381533414 38.0 35.0 40.0 29.0 41.0 38 35.28543601944114 38.0 34.0 40.0 29.0 41.0 39 35.12527577378113 37.0 34.0 40.0 28.0 41.0 40 34.8187694916596 37.0 33.0 40.0 26.0 41.0 41 34.43721315881028 37.0 33.0 39.0 25.0 40.0 42 35.123571653267724 38.0 34.0 40.0 28.0 41.0 43 35.104457587607 38.0 34.0 40.0 28.0 41.0 44 35.67681708620392 38.0 35.0 40.0 30.0 41.0 45 35.861153760418986 38.0 35.0 40.0 30.0 41.0 46 35.667898577746854 38.0 35.0 40.0 30.0 41.0 47 35.12307999991667 38.0 34.0 40.0 26.0 41.0 48 35.50044061306673 38.0 35.0 40.0 29.0 41.0 49 35.65591973550716 38.0 35.0 40.0 29.0 41.0 50 35.34815307085433 38.0 35.0 40.0 28.0 41.0 51 34.9281331963926 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 11.0 11 11.0 12 15.0 13 18.0 14 21.0 15 50.0 16 112.0 17 388.0 18 987.0 19 2111.0 20 3002.0 21 3528.0 22 3771.0 23 3453.0 24 3668.0 25 4399.0 26 5784.0 27 7689.0 28 10227.0 29 13504.0 30 18623.0 31 25437.0 32 34217.0 33 44803.0 34 51385.0 35 60916.0 36 67375.0 37 67706.0 38 42109.0 39 4687.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.61155427040518 3.4894888263442865 39.49726361577707 14.401693287473464 2 15.738115426040544 28.186528281525707 38.86686402243272 17.20849227000102 3 15.349167626710111 28.419855295585744 39.60434404901534 16.626633028688804 4 15.103965934255948 3.6638591038159385 62.27248012033007 18.95969484159804 5 34.755933693462474 4.2765508434146575 39.21893782043403 21.748577642688844 6 17.745977713103603 25.060362948503478 41.661579998875034 15.532079339517887 7 63.08454146033545 1.5664159095691157 30.775833154518732 4.573209475576704 8 60.99918127217387 20.967348800969972 11.008035199046692 7.025434727809456 9 57.2201169551658 4.040932224752247 11.114490649211584 27.624460170870375 10 43.299035651117784 22.2766883396908 18.351794638895196 16.07248137029622 11 37.51398399626677 20.074247989116962 25.358271546812272 17.053496467803996 12 29.216083731065616 15.647701208092279 26.57782185065821 28.55839321018389 13 27.66612570909538 18.18888238443542 36.80650315720616 17.33848874926304 14 20.926933228891716 28.830260847102057 24.532668906883774 25.710137017122452 15 14.274196740504944 21.99461264590751 40.94764100138954 22.783549612198005 16 17.163493488718014 22.86042253022314 25.84992489786735 34.126159083191496 17 17.545358146550196 27.680500319783008 33.48346815607077 21.290673377596022 18 16.38205631930802 24.23871853470635 30.390635253628545 28.98858989235708 19 18.008887259303393 27.904035932360166 26.91510438258964 27.171972425746805 20 24.152054215198337 25.372854485191027 36.12339665800718 14.351694641603457 21 23.32957649063671 34.35365292190003 25.180151370900372 17.136619216562885 22 18.0480528652349 21.124427880078247 34.38344378173091 26.44407547295594 23 22.019403641151385 31.207071475147547 27.45592306875022 19.317601814950844 24 23.251036951082575 22.671052658990487 25.39660384197928 28.68130654794766 25 18.596788003658236 35.22154608312692 21.833991996050106 24.347673917164744 26 18.425750969244582 21.649830317095578 32.89473410095143 27.029684612708405 27 24.281842366769233 27.321135052592325 24.140387864495334 24.256634716143104 28 14.405859841295964 27.767997950055516 34.07428548810137 23.751856720547153 29 22.816673715086882 21.624830994160575 31.25144527335718 24.307050017395362 30 21.840033499092733 28.136529635655698 30.2554305820884 19.768006283163164 31 23.03708441229717 21.329630655836404 24.15455414749184 31.47873078437459 32 26.996977165201773 31.72143254453525 22.917712645282524 18.363877644980448 33 23.776856043482155 20.119455098091095 26.204498628162153 29.8991902302646 34 24.03414074202157 21.575457331363943 33.13035271961384 21.260049207000645 35 24.52850235306127 21.494209531825177 25.3876457512609 28.589642363852647 36 20.86651819846546 24.660373781543417 29.418786574530277 25.054321445460854 37 24.223093957871974 26.8432313291515 28.96317391403983 19.970500798936698 38 21.18671785972463 22.55980567192972 24.95578244755871 31.29769402078694 39 21.34442192190628 29.346913521092137 30.078768700014376 19.229895856987206 40 19.30385218733659 19.58655286419326 33.48680139912877 27.622793549341374 41 23.06875022134817 22.36814419609469 29.661904990073186 24.901200592483956 42 19.507388341565747 20.190286513073605 29.73565299273145 30.5666721526292 43 27.539254145200232 20.517777643522155 25.82805049029922 26.114917720978394 44 24.949324289133838 18.824906825440145 31.750598421292757 24.475170464133264 45 19.596969248749513 17.2399497513609 28.06153166685069 35.101549333038896 46 28.181945072320957 26.733234308237485 24.25600973306973 20.828810886371826 47 15.819988208652683 20.89839233520759 42.4019766131334 20.879642843006334 48 22.04981948405564 22.66667777747686 28.547976825627643 26.735525912839858 49 19.741965321772536 17.02870547256012 37.03545528975257 26.19387391591478 50 25.152443787980744 18.276588342399062 29.39399557928639 27.1769722903338 51 19.373641963863477 17.973679879503262 28.649432411205527 34.003245745427726 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 56.0 1 213.0 2 370.0 3 1695.5 4 3021.0 5 2093.0 6 1165.0 7 1180.5 8 1196.0 9 1235.5 10 1275.0 11 1272.5 12 1270.0 13 1236.5 14 1203.0 15 1092.0 16 981.0 17 1040.0 18 1099.0 19 1119.0 20 1139.0 21 1299.5 22 1460.0 23 1582.5 24 1705.0 25 1945.0 26 2725.5 27 3266.0 28 3699.0 29 4132.0 30 4951.5 31 5771.0 32 6332.5 33 6894.0 34 7717.0 35 8540.0 36 9335.0 37 10130.0 38 11606.0 39 13082.0 40 13865.5 41 14649.0 42 16607.0 43 18565.0 44 20872.5 45 23180.0 46 68400.0 47 113620.0 48 82938.5 49 52257.0 50 48403.0 51 44549.0 52 36726.5 53 28904.0 54 26425.5 55 23947.0 56 22758.0 57 21569.0 58 20462.0 59 19355.0 60 17867.0 61 16379.0 62 14734.0 63 13089.0 64 10686.5 65 8284.0 66 6513.0 67 4742.0 68 3652.0 69 2562.0 70 2236.5 71 1911.0 72 1507.0 73 1103.0 74 833.5 75 464.5 76 365.0 77 272.0 78 179.0 79 172.5 80 166.0 81 143.5 82 121.0 83 65.5 84 10.0 85 6.5 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 480013.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.03753403054533 #Duplication Level Percentage of deduplicated Percentage of total 1 74.82348110371126 20.978658977291698 2 9.736829057620259 5.459933521052612 3 3.341691405975716 2.81078359543875 4 1.737983955867569 1.94915137228715 5 1.0291509042756484 1.4427426750597492 6 0.7999798816915642 1.3457677894007314 7 0.6258894046633273 1.228387683782406 8 0.6010660411081644 1.3481927665740256 9 0.545701143197688 1.3770102935621404 >10 6.588542810854473 34.88004779064003 >50 0.0994185493725508 1.8946283225680534 >100 0.05456807597140006 2.705923260251785 >500 0.0037375394500958944 0.8058457854285581 >1k 0.008222586790210968 5.346666276220532 >5k 0.0014950157800383578 3.019039932145222 >10k+ 0.002242523670057537 13.407219958296565 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGC 26170 5.451935676742088 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCG 22418 4.670290179640968 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTC 15383 3.204704872576368 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCATTCGT 8183 1.704745496476137 No Hit GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC 6222 1.2962148941799492 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTA 4633 0.9651821929822734 No Hit GAACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCT 3905 0.8135196338432502 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTC 3502 0.7295635743198622 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCT 3380 0.7041475960026082 No Hit CTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCT 1758 0.3662400809978063 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGCATTCGTCGT 1671 0.34811557186992853 No Hit CCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC 1516 0.31582477974554857 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATG 1429 0.2977002706176708 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1386 0.2887421798992944 No Hit TCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC 1309 0.2727009476826669 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTAT 1022 0.21291090032978274 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGCATTCG 989 0.20603608652265668 No Hit TGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCTT 909 0.1893698712326541 Illumina Single End Adapter 1 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTT 902 0.1879115773947789 No Hit CGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTG 540 0.11249695320751729 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATGAATGAT 505 0.10520548401814118 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4108222068985632 0.0 2 0.0 0.0 0.0 2.438683952309625 0.0 3 0.0 0.0 0.0 2.9582532139754547 0.0 4 0.0 0.0 0.0 4.424671831804555 0.0 5 0.0 0.0 0.0 8.797261740827853 0.0 6 0.0 0.0 0.0 9.456410555547453 0.0 7 0.0 0.0 0.0 10.681585707053767 0.0 8 0.0 0.0 0.0 12.108213735877987 0.0 9 0.0 0.0 0.0 12.42549680946141 0.0 10 2.0832769112503203E-4 0.0 0.0 18.035761531458522 0.0 11 2.0832769112503203E-4 0.0 0.0 19.23093749544283 0.0 12 2.0832769112503203E-4 0.0 0.0 26.083668567309637 0.0 13 2.0832769112503203E-4 0.0 0.0 26.72635949443036 0.0 14 2.0832769112503203E-4 0.0 0.0 27.05885048946591 0.0 15 2.0832769112503203E-4 0.0 0.0 28.336315891444606 0.0 16 2.0832769112503203E-4 0.0 0.0 29.08587892411247 0.0 17 2.0832769112503203E-4 0.0 0.0 29.677946222289812 0.0 18 2.0832769112503203E-4 0.0 0.0 30.194390568588766 0.0 19 2.0832769112503203E-4 0.0 0.0 32.57432611200113 0.0 20 2.0832769112503203E-4 0.0 0.0 33.29347330176474 0.0 21 2.0832769112503203E-4 0.0 0.0 33.858041344713584 0.0 22 2.0832769112503203E-4 0.0 0.0 34.55739740382031 0.0 23 2.0832769112503203E-4 0.0 0.0 35.14175657742603 0.0 24 2.0832769112503203E-4 0.0 0.0 35.60028582559222 0.0 25 2.0832769112503203E-4 0.0 0.0 36.02277438319379 0.0 26 2.0832769112503203E-4 0.0 0.0 36.41776368556685 0.0 27 2.0832769112503203E-4 0.0 0.0 36.828377564774286 0.0 28 2.0832769112503203E-4 0.0 0.0 37.20690897954847 0.0 29 2.0832769112503203E-4 0.0 0.0 37.60356490345053 0.0 30 2.0832769112503203E-4 0.0 0.0 38.060010874705476 0.0 31 2.0832769112503203E-4 0.0 0.0 38.45166693402054 0.0 32 2.0832769112503203E-4 0.0 0.0 38.83540654107284 0.0 33 2.0832769112503203E-4 0.0 0.0 39.21956280350741 0.0 34 2.0832769112503203E-4 0.0 0.0 39.612260501278094 0.0 35 2.0832769112503203E-4 0.0 0.0 40.008291442106774 0.0 36 2.0832769112503203E-4 0.0 0.0 40.436196519677594 0.0 37 2.0832769112503203E-4 0.0 0.0 40.87785122486266 0.0 38 2.0832769112503203E-4 0.0 0.0 41.29867316093522 0.0 39 2.0832769112503203E-4 0.0 0.0 41.743244453796045 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGGC 40 6.8012014E-9 45.000004 28 ATTCGAT 20 7.029176E-4 45.000004 24 TCTAGCG 20 7.029176E-4 45.000004 1 TCGTGCG 35 1.2099554E-7 45.000004 1 TGATTCG 35 1.2099554E-7 45.000004 26 GTGTATC 20 7.029176E-4 45.000004 23 GATTATC 20 7.029176E-4 45.000004 9 TATGTCG 20 7.029176E-4 45.000004 1 TCGCGCG 20 7.029176E-4 45.000004 1 ATTGGGT 25 3.8873994E-5 45.0 4 CCTTGCG 25 3.8873994E-5 45.0 1 CGGGTAT 60 0.0 44.999996 6 TGGTTCG 30 2.1628512E-6 44.999996 1 CAATCAT 30 2.1628512E-6 44.999996 45 TACGGCT 2920 0.0 43.998287 7 TGATACC 2430 0.0 43.51852 4 GATACCT 2425 0.0 43.515465 5 ACGGCTG 2980 0.0 43.11242 8 GACGAAT 85 0.0 42.35294 20 ATACCTG 2500 0.0 42.3 6 >>END_MODULE