SRR3549561_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549561_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	100797
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3021	2.9971130093157536	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC	257	0.254967905790847	No Hit
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	253	0.25099953371628125	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	251	0.24901534767899838	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	237	0.2351260454180184	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	167	0.16567953411311845	Illumina Single End Adapter 2 (95% over 21bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	158	0.15675069694534557	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	150	0.14881395279621418	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	144	0.1428613946843656	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	134	0.13294046449795133	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	116	0.11508279016240563	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	101	0.10020139488278422	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTGCG	35	1.1972406E-7	45.000004	1
CGGGATA	35	1.1972406E-7	45.000004	6
TGGGACC	90	0.0	45.000004	6
TGATCAG	20	7.002651E-4	45.0	14
GGGTGTA	20	7.002651E-4	45.0	7
TCGTTTG	20	7.002651E-4	45.0	1
GGAGATA	20	7.002651E-4	45.0	8
TTTACGG	20	7.002651E-4	45.0	2
GTCCTAG	20	7.002651E-4	45.0	1
ATGTGCT	20	7.002651E-4	45.0	11
ATAGCAT	20	7.002651E-4	45.0	10
TTCGTTG	20	7.002651E-4	45.0	1
TACGGGA	25	3.8654343E-5	45.0	4
GGATAGC	40	6.708433E-9	45.0	8
GGATAAT	20	7.002651E-4	45.0	8
ACGGGAT	20	7.002651E-4	45.0	5
GCACCAC	25	3.8654343E-5	45.0	29
GTTCGGG	25	3.8654343E-5	45.0	3
GTGCTAG	20	7.002651E-4	45.0	1
AATTGAT	20	7.002651E-4	45.0	11