SRR3549553_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549553_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50573
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2170	4.29082712119115	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCC	186	0.36778518181638425	No Hit
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	180	0.3559211436932751	TruSeq Adapter, Index 14 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	175	0.3460344452573508	TruSeq Adapter, Index 15 (95% over 23bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	112	0.22146204496470448	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	95	0.18784727028256185	TruSeq Adapter, Index 15 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	95	0.18784727028256185	TruSeq Adapter, Index 15 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	89	0.17598323215945266	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	88	0.1740058924722678	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTG	54	0.10677634310798252	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53	0.10479900342079766	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGACC	20	6.969406E-4	45.000004	10
TTCGTTG	20	6.969406E-4	45.000004	1
GGCGCGA	20	6.969406E-4	45.000004	8
GCGCGAC	20	6.969406E-4	45.000004	9
ACCCGCT	20	6.969406E-4	45.000004	34
TCTGCGG	20	6.969406E-4	45.000004	2
CTGCGGG	20	6.969406E-4	45.000004	3
TCAGATC	20	6.969406E-4	45.000004	17
CCCTGGG	20	6.969406E-4	45.000004	3
TTAAGCA	20	6.969406E-4	45.000004	45
CAGACGT	20	6.969406E-4	45.000004	23
GTGGCGA	20	6.969406E-4	45.000004	28
CTATGGG	20	6.969406E-4	45.000004	3
TAGGGGG	20	6.969406E-4	45.000004	5
GACCTCA	20	6.969406E-4	45.000004	13
CGACCTC	20	6.969406E-4	45.000004	12
TTCGGGC	20	6.969406E-4	45.000004	4
TGGCCTG	20	6.969406E-4	45.000004	1
ACGTGGC	20	6.969406E-4	45.000004	26
AGGGAAT	25	3.837957E-5	45.0	6