SRR3549552_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549552_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	731685
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27947	3.819539829298127	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	3796	0.518802490142616	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	2289	0.31283954160601896	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	2192	0.2995824705986866	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	1005	0.13735418930277374	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCC	992	0.13557746844612095	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATGCG	30	2.1644155E-6	45.000004	24
AACCGTA	20	7.0316053E-4	45.0	40
TCGATAA	20	7.0316053E-4	45.0	22
CAATCGA	25	3.889411E-5	45.0	41
CGTTTTT	13110	0.0	43.81579	1
CCGATGA	570	0.0	43.026318	18
CGATGAA	600	0.0	42.0	19
ATCGAAT	60	3.6379788E-12	41.250004	43
CCAATCG	50	1.0804797E-9	40.5	40
TCAAGCG	330	0.0	40.227276	17
CGAATAT	90	0.0	40.0	14
CACGACC	340	0.0	39.04412	27
GCGGGAT	255	0.0	38.82353	5
GTTTTTT	15465	0.0	38.467506	2
ATGAATG	670	0.0	38.283585	21
AACACGT	260	0.0	38.076927	41
ACGACCA	350	0.0	37.92857	28
GCTACGA	95	0.0	37.894737	10
GATGAAT	690	0.0	37.826088	20
TTGGGAC	995	0.0	37.76382	5