SRR3549551_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549551_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	743055
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27903	3.755172901063851	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	4022	0.5412789093674089	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	2298	0.30926378262712717	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	2252	0.3030731237929898	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	1138	0.15315151637496552	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCC	963	0.1296000968972687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAATCCG	20	7.031676E-4	45.0	17
TATCGCG	20	7.031676E-4	45.0	1
ACCCGAG	65	0.0	44.999996	41
CGATGAA	485	0.0	43.60825	19
CGTTTTT	13245	0.0	43.369198	1
CCGATGA	465	0.0	42.580647	18
ATCGAAT	85	0.0	42.35294	43
AACCCGA	70	0.0	41.785713	24
CGAATAT	65	0.0	41.53846	14
TTACACG	645	0.0	40.116276	34
CAATCGA	40	3.4560253E-7	39.375	41
TATGCGG	75	0.0	39.0	2
ACACGCG	660	0.0	38.863636	36
AACGACG	70	0.0	38.571426	11
TACACGC	685	0.0	37.773724	35
GTTTTTT	15870	0.0	37.698486	2
AAACACG	305	0.0	37.62295	40
GATGAAT	600	0.0	37.5	20
CGAACGA	30	1.13953356E-4	37.499996	22
ATTCGAC	30	1.13953356E-4	37.499996	11