SRR3549548_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549548_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1001318
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33045	3.3001504017704666	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	21541	2.1512646332134246	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	20498	2.047101919669875	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	20056	2.002960098590058	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCT	5210	0.5203142258503293	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTATGCGT	4653	0.4646875418198814	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTC	4465	0.4459122876049367	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTA	3846	0.3840937644184964	No Hit
GCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	3709	0.3704117972512229	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCT	3448	0.34434615177196454	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTTATGCGTCGT	1537	0.15349769004452132	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTT	1370	0.13681967167273534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	35	1.2117198E-7	45.000004	9
CTTCGCG	45	3.8380676E-10	45.0	1
TACGAGT	20	7.0328516E-4	45.0	29
TCGAATG	20	7.0328516E-4	45.0	44
CGTTTTT	36140	0.0	44.340065	1
CGGCTGT	2510	0.0	42.310757	9
TACGGCT	2475	0.0	42.18182	7
ACGGCTG	2495	0.0	42.02405	8
ACATACG	75	0.0	42.0	17
GCGACTG	440	0.0	41.93182	11
TGATACC	2545	0.0	41.817287	4
ACGGCCT	140	0.0	41.785717	8
CGATGAA	625	0.0	41.760002	19
GATACCT	2555	0.0	41.741684	5
GACCCGT	65	0.0	41.53846	38
CCGATGA	635	0.0	41.102364	18
CGCTTTT	945	0.0	40.95238	1
GGCGACT	465	0.0	40.645157	10
ATACCTG	2640	0.0	40.482952	6
ATGATAC	8375	0.0	40.325375	3