SRR3549547_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549547_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	595590
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32034	5.37853221175641	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	10484	1.7602713275911281	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	8506	1.4281636696385098	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	6265	1.0518981178327371	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTATGCGT	2280	0.3828136805520576	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCT	2081	0.3494014338722947	No Hit
GCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	1858	0.3119595695025101	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTC	1547	0.25974244026931276	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTA	1368	0.22968820833123457	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCT	927	0.1556439832770866	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGTTATGCGTCGTATGCCG	857	0.14389093168119008	No Hit
GAATCTTTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	685	0.11501200490270153	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCC	651	0.1093033798418375	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTT	596	0.10006883930220453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCG	95	0.0	45.000004	4
CGTTCGG	40	6.8048394E-9	45.000004	2
TACGCCA	20	7.030545E-4	45.000004	13
CGTTTCG	20	7.030545E-4	45.000004	2
CCGCTTG	35	1.2106102E-7	45.0	1
CTACGCC	25	3.888534E-5	45.0	12
CGTTTTT	22700	0.0	44.454845	1
CCGATGA	150	0.0	43.5	18
CGATGAA	135	0.0	43.333332	19
ACGGCTG	1110	0.0	42.77027	8
TACGGCT	1120	0.0	42.38839	7
TGATACC	1435	0.0	42.1777	4
CCGGGTA	70	0.0	41.785713	5
CGGCTGT	1060	0.0	41.603775	9
GACCCGT	65	0.0	41.538464	38
GATACCT	1455	0.0	41.443302	5
GAATGAT	4055	0.0	41.115906	1
ATGATAC	3805	0.0	40.742443	3
TGCTACG	105	0.0	40.714287	4
CGGCGAC	1220	0.0	40.573772	9