SRR3549542_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549542_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	344088
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCG	14034	4.078607798005161	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGC	11564	3.3607681755829906	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTC	10470	3.042826253749041	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8754	2.5441166213294273	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACTAGGGT	2684	0.7800330148101648	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTC	2441	0.7094115458836111	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTA	2328	0.6765711097161191	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCT	2244	0.6521587500871869	No Hit
GAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	2164	0.6289088837739183	No Hit
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	2143	0.6228057938666853	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGT	799	0.2322080398037711	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTT	619	0.17989584059891656	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTAT	585	0.17001464741577738	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATG	544	0.15809909093022714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	30	2.1610522E-6	45.000004	17
ATCACAT	30	2.1610522E-6	45.000004	32
CACCGGT	95	0.0	45.000004	16
CGGACAG	20	7.026389E-4	45.0	12
CGGGTTC	20	7.026389E-4	45.0	6
CGGGTCT	20	7.026389E-4	45.0	6
CCGCTGG	25	3.8850892E-5	45.0	2
TCTACGG	20	7.026389E-4	45.0	2
TCGCTTG	25	3.8850892E-5	45.0	1
GCGATAT	25	3.8850892E-5	45.0	9
ATGCGGC	20	7.026389E-4	45.0	6
CCGGTGA	40	6.7902874E-9	45.0	18
ATCGCAG	20	7.026389E-4	45.0	24
GCGAGGG	40	6.7902874E-9	45.0	3
CGTTTTT	7375	0.0	44.145763	1
GATACCT	1635	0.0	43.62385	5
TGATACC	1645	0.0	43.35866	4
GCGACTG	295	0.0	42.711864	11
ACGGCTG	1420	0.0	42.14789	8
GCGACCA	1190	0.0	41.97479	11