SRR3549537_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549537_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	588147
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41478	7.052318553014808	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCG	10938	1.8597391468459414	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGC	7961	1.3535731713330172	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTCTTC	5799	0.9859779952970941	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGAAACTT	2267	0.38544785572314405	No Hit
GAACTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTCTTCT	1935	0.3289993828073594	No Hit
GCTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTCTTCTGC	1729	0.29397412551623997	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTC	1427	0.24262641822537565	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGAAACTTCGTA	1380	0.2346352187463338	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTCT	944	0.1605040916641588	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCCGAAACTTCGTATGCCG	889	0.15115268801847156	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	637	0.10830625676914105	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	629	0.10694605260249564	No Hit
GAATCTTTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTCTTC	594	0.10099515937342196	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCGAAACTTCGT	591	0.10048508281092992	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTAGT	25	3.8884733E-5	45.000004	13
CCCGTTG	20	7.0304744E-4	45.0	1
AGATTCG	20	7.0304744E-4	45.0	34
ATAAGCG	20	7.0304744E-4	45.0	34
CGTTTTT	19010	0.0	44.372696	1
TACGGCT	1075	0.0	43.534885	7
GATACCT	1545	0.0	43.398056	5
ACGGCTG	1095	0.0	42.739723	8
TGATACC	1590	0.0	42.31132	4
CGACCAC	855	0.0	41.842102	12
GAATGAT	4380	0.0	41.712326	1
ATGATAC	4215	0.0	41.263344	3
ATACCTG	1625	0.0	41.26154	6
GGGCAAC	60	3.6379788E-12	41.249996	7
AATGATA	4175	0.0	41.227547	2
ACACGAC	115	0.0	41.08696	26
CACGACC	115	0.0	41.08696	27
ACCACCG	515	0.0	41.06796	14
ATACGGC	2630	0.0	40.979084	6
CGGTAGG	50	1.0804797E-9	40.500004	31