SRR3549531_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549531_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	369849
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19856	5.3686774872988705	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	4767	1.2889043907108035	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	3224	0.8717071020876087	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	2960	0.8003266197826681	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT	1110	0.30012248241850054	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	811	0.21927867859585937	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGCTGAT	674	0.18223653436943185	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTC	626	0.16925826485944265	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTA	409	0.11058567144969975	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCAGA	20	7.0270745E-4	45.0	16
GCGGCAA	20	7.0270745E-4	45.0	5
ACATACG	50	2.1827873E-11	45.0	17
TATCGGG	20	7.0270745E-4	45.0	3
CGTTTTT	8520	0.0	44.154926	1
TGATACC	595	0.0	43.487396	4
GCGGGAT	130	0.0	43.26923	5
GATACCT	610	0.0	42.78688	5
TACGGCT	395	0.0	41.58228	7
GAATGAT	1630	0.0	41.27301	1
GCGATGC	60	3.6379788E-12	41.250004	9
ATGATAC	1545	0.0	40.92233	3
AATGATA	1530	0.0	40.88235	2
TTGGGAC	580	0.0	40.73276	5
CGACCAC	390	0.0	40.384617	12
ATACGGC	950	0.0	40.263157	6
ACTAATC	220	0.0	39.886364	10
GGATCCC	40	3.4497498E-7	39.375	8
CACCGGT	80	0.0	39.375	16
GTTTTTT	9720	0.0	39.25926	2