SRR3549526_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549526_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1123206
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGC	4865	0.43313515063131786	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC	4449	0.39609831144064406	No Hit
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	4267	0.3798946942947242	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCG	4248	0.37820310788938094	No Hit
TCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	3839	0.3417894847427809	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	3672	0.3269213305484479	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	3462	0.3082248492262328	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2873	0.2557856706605912	No Hit
TCCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	1386	0.12339677672662006	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAAC	30	2.1654578E-6	45.000004	45
CATTTCG	30	2.1654578E-6	45.000004	12
TAACGCC	50	2.1827873E-11	45.0	12
CTAAACG	20	7.03322E-4	45.0	45
TCGAAAC	25	3.8907492E-5	45.0	12
TACGTAA	25	3.8907492E-5	45.0	35
TACGGGA	160	0.0	42.1875	4
GCCGATT	255	0.0	40.588234	9
TCAAGCG	295	0.0	39.66102	17
TCCGATA	40	3.4581353E-7	39.375	14
TACGAAT	115	0.0	39.130436	12
TAGCGGG	175	0.0	38.571426	3
AACTACC	35	6.248163E-6	38.571426	17
TTTGGGA	5835	0.0	38.213367	4
TCTACGG	190	0.0	37.894737	2
ACGGGAT	125	0.0	37.800003	5
CGTTTTT	1685	0.0	37.789314	1
TTTTGCG	870	0.0	37.75862	1
GGCCGAT	485	0.0	37.57732	8
TTTAGCG	60	1.5643309E-10	37.500004	1