SRR3549512_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549512_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	874857
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	2508	0.2866754223833152	No Hit
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	2102	0.2402678380581055	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2056	0.23500983589318022	No Hit
CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT	1907	0.21797848105461806	No Hit
CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	1873	0.214092131628369	No Hit
TCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG	876	0.10013064992335892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCGTC	35	1.2114833E-7	45.000004	12
CTATCGT	25	3.8900384E-5	45.0	17
ATCGTAG	25	3.8900384E-5	45.0	22
ACGATAG	25	3.8900384E-5	45.0	29
GCGATCG	20	7.0323615E-4	45.0	9
CGGTCGT	20	7.0323615E-4	45.0	23
CGATAGT	30	2.1649048E-6	44.999996	10
TACGGGA	165	0.0	43.636364	4
CAACGAT	75	0.0	42.0	26
TACAACG	75	0.0	42.0	24
CGTTTTT	1330	0.0	40.26316	1
CGTTAGG	85	0.0	39.705883	2
TTTAGCG	80	0.0	39.375	1
AATGCGA	80	0.0	39.375	25
ACGGGAT	115	0.0	39.130436	5
ATGGGCG	240	0.0	38.437496	5
TGGGCGA	1865	0.0	37.520107	6
CAAACGG	30	1.13969916E-4	37.499996	4
CAACCCG	60	1.546141E-10	37.499996	23
AACGCGT	30	1.13969916E-4	37.499996	36