SRR3549511_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549511_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2054206
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8969	0.43661638608786074	No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	5944	0.2893575425249464	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	5698	0.27738211260214407	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	4857	0.23644172006118178	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	4369	0.21268558265334636	No Hit
TCCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	2577	0.12544993053277032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGCA	20	7.0345856E-4	45.0	23
TAGCGCG	20	7.0345856E-4	45.0	1
CCCGATA	20	7.0345856E-4	45.0	16
CTTTACG	90	0.0	42.500004	1
CGTTTTT	5240	0.0	42.337788	1
CTCGCAC	45	1.929584E-8	40.000004	14
TAGGGCG	210	0.0	38.57143	5
CGTTTGG	1380	0.0	38.152176	2
TGGGCGA	3375	0.0	38.066666	6
TTTGGGA	16055	0.0	38.020866	4
AGGGCGA	280	0.0	37.767857	6
TTGGGAT	10165	0.0	37.629116	5
TTGGGAC	6070	0.0	37.47529	5
ACGGGAC	230	0.0	37.173912	5
TATGGGA	1800	0.0	37.0	4
CGACGGT	55	2.752131E-9	36.81818	28
TTTGGGC	4445	0.0	36.799774	4
TACGGGA	435	0.0	36.72414	4
TTTTGCG	1650	0.0	36.545452	1
TTGGGCG	2750	0.0	36.245453	5