SRR3549510_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549510_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1348442
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	3730	0.2766155311092357	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	3646	0.27038611968479176	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3348	0.24828654105997885	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	3205	0.2376817097064612	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	2780	0.20616385428516762	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	2760	0.20468066108887145	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	2706	0.20067603945887177	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	2449	0.181617006886466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAA	20	7.033721E-4	45.000004	15
CGTACAC	25	3.8911654E-5	45.000004	10
TGCGTAT	35	1.2121382E-7	45.0	37
ACGGGTA	55	6.184564E-11	40.909092	5
GCGTATT	40	3.4588084E-7	39.375004	38
CGTTTTT	1855	0.0	38.692726	1
CGGCCTA	65	9.094947E-12	38.076927	45
TACGGGA	220	0.0	37.840908	4
CGATGAA	220	0.0	37.840908	19
TTTGGGA	6195	0.0	37.5908	4
TTGGGAT	2665	0.0	37.14822	5
TTTGGGC	3520	0.0	37.137783	4
ACGGGAT	140	0.0	36.964283	5
TATGGGA	770	0.0	36.525974	4
GCGATCT	580	0.0	36.077583	9
TGGGCGA	2630	0.0	36.01711	6
CGAACGA	25	0.0021072372	36.000004	22
GTTTACG	25	0.0021072372	36.000004	1
CGATTAT	25	0.0021072372	36.000004	11
AACGGAC	25	0.0021072372	36.000004	20