SRR3549501_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549501_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1143318
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2955	0.2584582766999207	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC	2953	0.2582833472402254	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT	2640	0.23090688679789872	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	2568	0.22460942624886515	No Hit
TCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	2389	0.20895323960612883	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG	2341	0.20475493257343974	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	2335	0.20423014419435362	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	2080	0.18192663808319295	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1635	0.14300483330097138	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.033273E-4	45.0	10
CGACACG	20	7.033273E-4	45.0	40
TTATCGA	20	7.033273E-4	45.0	13
GTTACGT	40	6.8157533E-9	45.0	9
ACGGATA	20	7.033273E-4	45.0	34
CGTACAT	35	1.2119199E-7	45.0	35
CGATAAC	35	1.2119199E-7	45.0	16
TGCGTAG	20	7.033273E-4	45.0	1
AGTCGAC	20	7.033273E-4	45.0	38
CGATCTA	30	2.1654923E-6	44.999996	10
CGAATAT	250	0.0	43.199997	14
TCGTTCA	235	0.0	42.12766	16
TCGTTTG	485	0.0	41.75258	1
ATTAGTC	105	0.0	40.714283	31
ATAGCGG	45	1.9283107E-8	40.0	2
CGTTCAT	250	0.0	39.6	17
ACGGCAT	40	3.458208E-7	39.375	40
CGATAGG	40	3.458208E-7	39.375	10
TACGTTG	40	3.458208E-7	39.375	1
ACACGCG	235	0.0	39.255318	36